RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 DRICH1Q6PGQ1 229 aaPredicted RBP22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 ZNF365Q70YC5 407 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 TRAIPQ9BWF2 469 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 SCN1AP35498 2009 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 C3orf70A6NLC5 250 aaPredicted RBP22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 KLRC2P26717 231 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 MAGOHP61326 146 aaKnown RBP22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 ADAM17P78536 824 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 PCBP1Q15365 356 aaKnown RBP eCLIP22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 ZBTB6Q15916 424 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 CCL14Q16627 93 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 TRMT10CQ7L0Y3 403 aaKnown RBP22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 DPH6Q7L8W6 267 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 RASAL3Q86YV0 1011 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 CCDC89Q8N998 374 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 UBA3Q8TBC4 463 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 NT5C1AQ9BXI3 368 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 CDC42EP4Q9H3Q1 356 aaKnown RBP22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 TUBGCP4Q9UGJ1 667 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 SLC12A6Q9UHW9 1150 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 DNPEPQ9ULA0 475 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 KIAA1257Q9ULG3 409 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 HES2Q9Y543 173 aa22.24■■□□□ 1.15
CCDC88B-208ENST00000492980 HAS3O00219 553 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 PPEF2O14830 753 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 IL1R2P27930 398 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 LSP1P33241 339 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 PSEN2P49810 448 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 SKIDA1Q1XH10 827 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 LCLAT1Q6UWP7 414 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 USP6NLQ92738 828 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 TMEM109Q9BVC6 243 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 ANAPC5Q9UJX4 755 aa22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 PDCD11Q14690 1871 aaKnown RBP22.23■■□□□ 1.15
CCDC88B-208ENST00000492980 PPP2R2AP63151 447 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 LMNB2Q03252 620 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 BYSLQ13895 437 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 TAF1CQ15572 869 aaPredicted RBP22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 DNAJB3Q8WWF6 145 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 PGM2Q96G03 612 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 ZWILCHQ9H900 591 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 TSPAN16Q9UKR8 245 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 KRT7P08729 469 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 YARSP54577 528 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 PRUNE1Q86TP1 453 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 UHMK1Q8TAS1 419 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 BCAS4Q8TDM0 211 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 MRPL45Q9BRJ2 306 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 TSPYL1Q9H0U9 437 aa22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 NXF3Q9H4D5 531 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-208ENST00000492980 HADHQ16836 314 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 SMTNL2Q2TAL5 461 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 IZUMO3Q5VZ72 239 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 ALKAL1Q6UXT8 129 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 GSTA5Q7RTV2 222 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 BBOF1Q8ND07 529 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 IPO4Q8TEX9 1081 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 C18orf25Q96B23 403 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 RABEP2Q9H5N1 569 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 CNTN3Q9P232 1028 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 PFKMP08237 780 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 FAM102AQ5T9C2 384 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 C12orf29Q8N999 325 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 BEST2Q8NFU1 509 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 TMEM40Q8WWA1 233 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 DDX23Q9BUQ8 820 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 SNX9Q9Y5X1 595 aa22.21■■□□□ 1.15
CCDC88B-208ENST00000492980 TRPM7Q96QT4 1865 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 MANSC4A6NHS7 340 aaPredicted RBP22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 TREHO43280 583 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 RECQL4O94761 1208 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 MYL3P08590 195 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 CPT1AP50416 773 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 TAZQ16635 292 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 GOLGA7BQ2TAP0 167 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 KCNT1Q5JUK3 1230 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 GLRA4Q5JXX5 417 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 CROCCP2Q86T23 111 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 ALLCQ8N6M5 410 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 LRRC52Q8N7C0 313 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 DRG1Q9Y295 367 aaKnown RBP22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 NME7Q9Y5B8 376 aa22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 TRIP12Q14669 1992 aaPredicted RBP22.2■■□□□ 1.14
CCDC88B-208ENST00000492980 TLDC2A0PJX2 215 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 CYP2B6P20813 491 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 AXLP30530 894 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 ZNF157P51786 506 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 VCPP55072 806 aaKnown RBP22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 ZNF200P98182 395 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 BEX3Q00994 111 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 ACAP1Q15027 740 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 SNX17Q15036 470 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 STILQ15468 1287 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 OASLQ15646 514 aaKnown RBP22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 PTGISQ16647 500 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 C6orf118Q5T5N4 469 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 C17orf99Q6UX52 265 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 GLIS1Q8NBF1 620 aa22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 EPS8L3Q8TE67 593 aaKnown RBP22.19■■□□□ 1.14
CCDC88B-208ENST00000492980 NKD2Q969F2 451 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms