RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 C16orf59Q7L2K0 433 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CDH24Q86UP0 819 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 CABP7Q86V35 215 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 WDR63Q8IWG1 891 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 FAM20CQ8IXL6 584 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TRMT44Q8IYL2 757 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 NXPE1Q8N323 547 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HDDC3Q8N4P3 179 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 DPP10Q8N608 796 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 C19orf47Q8N9M1 422 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 OR6S1Q8NH40 331 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SLC26A7Q8TE54 656 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 AUTS2Q8WXX7 1259 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ST8SIA4Q92187 359 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ARHGAP45Q92619 1136 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 KAT2BQ92831 832 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 KIFAP3Q92845 792 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PHKBQ93100 1093 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 RAB7BQ96AH8 199 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 HDAC11Q96DB2 347 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ABHD17AQ96GS6 310 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 MSANTD3Q96H12 275 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PDLIM5Q96HC4 596 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 NLRP4Q96MN2 994 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 KCNC2Q96PR1 638 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PRRX2Q99811 253 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TSG101Q99816 390 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SH3GL2Q99962 352 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 PYM1Q9BRP8 204 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 ERP44Q9BS26 406 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TRIM62Q9BVG3 475 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 NUSAP1Q9BXS6 441 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 STK33Q9BYT3 514 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TFB2MQ9H5Q4 396 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SNX15Q9NRS6 342 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TLR7Q9NYK1 1049 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 DDX25Q9UHL0 483 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 DPP7Q9UHL4 492 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SRPK3Q9UPE1 567 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 INVSQ9Y283 1065 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 SBNO1A3KN83 1393 aa4.46□□□□□ -1.7
BRCA1-220ENST00000492859 TDRD9Q8NDG6 1382 aaKnown RBP4.46□□□□□ -1.7
BRCA1-220ENST00000492859 C15orf38-AP3S2A0A0A6YYH1 394 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 A0A1B0GWJ7 208 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 TARSL2A2RTX5 802 aaKnown RBP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 LRRIQ3A6PVS8 624 aaPredicted RBP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 TMEM229AB2RXF0 380 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 HSBP1L1C9JCN9 74 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 TMEM232C9JQI7 657 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 TAF4O00268 1085 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 PPEF2O14830 753 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 HAT1O14929 419 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 CACNG3O60359 315 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 H2AFYO75367 372 aaKnown RBP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 CLN5O75503 358 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 ERLIN2O94905 339 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 FKBP9O95302 570 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 GGPS1O95749 300 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 F13A1P00488 732 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 AFPP02771 609 aaKnown RBP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 ANXA6P08133 673 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 RARBP10826 455 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 IDO1P14902 403 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 ALDH4A1P30038 563 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 GSTT1P30711 240 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 BMI1P35226 326 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 MLH1P40692 756 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 CETN2P41208 172 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 PITPNBP48739 271 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 HSPA7P48741 367 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 CAMLGP49069 296 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 ALDH9A1P49189 494 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 FNTAP49354 379 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 SMCPP49901 116 aaPredicted RBP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 ZNF165P49910 485 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 CCR5P51681 352 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 AFF1P51825 1210 aaKnown RBP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 LUMP51884 338 aaPredicted RBP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 PMS2P54278 862 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 MAP3K7CLP57077 242 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 SCAND1P57086 179 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 GMFBP60983 142 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 PHEXP78562 749 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 MC1RQ01726 317 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 DSC2Q02487 901 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 LIPEQ05469 1076 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 ZNF543Q08ER8 600 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 TMEM62Q0P6H9 643 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 PMS2P11Q13670 270 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 VEPH1Q14D04 833 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 WDR43Q15061 677 aaKnown RBP eCLIP4.45□□□□□ -1.7
BRCA1-220ENST00000492859 TIGD6Q17RP2 521 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 FSCBQ5H9T9 825 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 KLHDC7AQ5VTJ3 777 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 KIF6Q6ZMV9 814 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 FKBP9P1Q75LS8 142 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 SZRD1Q7Z422 152 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 TRIM46Q7Z4K8 759 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 GPR149Q86SP6 731 aa4.45□□□□□ -1.7
BRCA1-220ENST00000492859 ZDHHC17Q8IUH5 632 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms