RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 TMEM74BQ9NUR3 256 aa17.47■□□□□ 0.39
USP48-210ENST00000489108 TMLHEQ9NVH6 421 aa17.47■□□□□ 0.39
USP48-210ENST00000489108 PCDHB5Q9Y5E4 795 aa17.47■□□□□ 0.39
USP48-210ENST00000489108 ADAMTS20P59510 1910 aa17.47■□□□□ 0.39
USP48-210ENST00000489108 TCHHQ07283 1943 aa17.47■□□□□ 0.39
USP48-210ENST00000489108 NPHP3-ACAD11A0A0J9YXS1 232 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 PRPF40AO75400 957 aaKnown RBP17.46■□□□□ 0.39
USP48-210ENST00000489108 CSH1P0DML2 217 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 CSH2P0DML3 217 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 TRAPPC10P48553 1259 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 SIM1P81133 766 aaPredicted RBP17.46■□□□□ 0.39
USP48-210ENST00000489108 NR1H3Q13133 447 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 TMEM132DQ14C87 1099 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 CD302Q8IX05 232 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 DCP1BQ8IZD4 617 aaKnown RBP17.46■□□□□ 0.39
USP48-210ENST00000489108 ATP2A3Q93084 1043 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 TRPC7Q9HCX4 862 aa17.46■□□□□ 0.39
USP48-210ENST00000489108 ADAMTS9Q9P2N4 1935 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 TADA3O75528 432 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 HNRNPLP14866 589 aaKnown RBP eCLIP17.45■□□□□ 0.388e-8■■■■■ 29.5
USP48-210ENST00000489108 ENGP17813 658 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 TOB1P50616 345 aaPredicted RBP17.45■□□□□ 0.38
USP48-210ENST00000489108 NCKAP1LP55160 1127 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 ANAPC15P60006 121 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 CRY1Q16526 586 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 DDR2Q16832 855 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 TMEM92Q6UXU6 159 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 ARMCX6Q7L4S7 300 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 PIP4P1Q86T03 277 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 EFCAB13Q8IY85 973 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 TMEFF1Q8IYR6 380 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 FRMD1Q8N878 549 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 SYT2Q8N9I0 419 aaPredicted RBP17.45■□□□□ 0.38
USP48-210ENST00000489108 CCDC26Q8TAB7 109 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 OLIG1Q8TAK6 271 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 PLIN2Q99541 437 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 MSTO1Q9BUK6 570 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 CPSF3Q9UKF6 684 aaKnown RBP17.45■□□□□ 0.38
USP48-210ENST00000489108 CIZ1Q9ULV3 898 aaPredicted RBP17.45■□□□□ 0.38
USP48-210ENST00000489108 MMP17Q9ULZ9 603 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 NOL7Q9UMY1 257 aaKnown RBP17.45■□□□□ 0.38
USP48-210ENST00000489108 PCDHB6Q9Y5E3 794 aa17.45■□□□□ 0.38
USP48-210ENST00000489108 TNRC6BQ9UPQ9 1833 aaKnown RBP17.44■□□□□ 0.38
USP48-210ENST00000489108 A0A0B4J269 797 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 TNFRSF10BO14763 440 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 HNRNPDLO14979 420 aaKnown RBP17.44■□□□□ 0.38
USP48-210ENST00000489108 MAP3K13O43283 966 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 CAPNS1P04632 268 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 USP17L7P0C7H9 530 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 OPRD1P41143 372 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 PTGER3P43115 390 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 TAF6P49848 677 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 SEMA3BQ13214 749 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 GNL2Q13823 731 aaKnown RBP17.44■□□□□ 0.38
USP48-210ENST00000489108 C19orf48Q6RUI8 117 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 LPCAT2Q7L5N7 544 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 SYT12Q8IV01 421 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 CHCHD4Q8N4Q1 142 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 LRRC15Q8TF66 581 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 PNMA5Q96PV4 448 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 FNBP1Q96RU3 617 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 LARSQ9P2J5 1176 aaKnown RBP17.44■□□□□ 0.38
USP48-210ENST00000489108 DERAQ9Y315 318 aa17.44■□□□□ 0.38
USP48-210ENST00000489108 ANAPC1Q9H1A4 1944 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 TRAV19A0A0A6YYK7 116 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 FAM221BA6H8Z2 402 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 H0YCG3 227 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 CKMP06732 381 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 P2RY2P41231 377 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 SLC12A3P55017 1021 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 FAM193AP78312 1265 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 USP4Q13107 963 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 ZC2HC1CQ53FD0 456 aaPredicted RBP17.43■□□□□ 0.38
USP48-210ENST00000489108 SOWAHCQ53LP3 525 aaPredicted RBP17.43■□□□□ 0.38
USP48-210ENST00000489108 DTHD1Q6ZMT9 781 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 PROSER1Q86XN7 944 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 ARL14EPQ8N8R7 260 aaPredicted RBP17.43■□□□□ 0.38
USP48-210ENST00000489108 FBXO18Q8NFZ0 1043 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 SH3RF2Q8TEC5 729 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 TMEM206Q9H813 350 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 FSCN3Q9NQT6 498 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 DPP3Q9NY33 737 aa17.43■□□□□ 0.38
USP48-210ENST00000489108 UXTQ9UBK9 157 aaPredicted RBP17.43■□□□□ 0.38
USP48-210ENST00000489108 MBD1Q9UIS9 605 aaPredicted RBP17.43■□□□□ 0.38
USP48-210ENST00000489108 KPNA7A9QM74 516 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 UPK3BL1B0FP48 263 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 UPK3BL2E5RIL1 263 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 ALDH1A2O94788 518 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 NOL4O94818 638 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 PIGRP01833 764 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 PLA2G4BP0C869 781 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 CYP2F1P24903 491 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 RDXP35241 583 aaKnown RBP17.42■□□□□ 0.38
USP48-210ENST00000489108 ACOT2P49753 483 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 NEK4P51957 841 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 GAB4Q2WGN9 574 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 ARSHQ5FYA8 562 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 SLC39A4Q6P5W5 647 aa17.42■□□□□ 0.38
USP48-210ENST00000489108 SLC23A3Q6PIS1 610 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms