RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 WNT6Q9Y6F9 365 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 PCDH15Q96QU1 1955 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 NOL4O94818 638 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 RHOBTB1O94844 696 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 SEC24BO95487 1268 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 HNRNPLP14866 589 aaKnown RBP eCLIP16.56■□□□□ 0.24
MCF2L-228ENST00000487354 ACOT2P49753 483 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 SMARCB1Q12824 385 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 CRELD2Q6UXH1 353 aaPredicted RBP16.56■□□□□ 0.24
MCF2L-228ENST00000487354 KCTD17Q8N5Z5 321 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 CD101Q93033 1021 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 PI4K2AQ9BTU6 479 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 TPSD1Q9BZJ3 242 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 BLOC1S4Q9NUP1 217 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 GCNT4Q9P109 453 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 LAMA5O15230 3695 aa16.56■□□□□ 0.24
MCF2L-228ENST00000487354 CSRP1P21291 193 aaKnown RBP16.55■□□□□ 0.24
MCF2L-228ENST00000487354 ZXDBP98169 803 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 GTF2BQ00403 316 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 FAM160A1Q05DH4 1040 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 TAF12Q16514 161 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 ZC2HC1CQ53FD0 456 aaPredicted RBP16.55■□□□□ 0.24
MCF2L-228ENST00000487354 CPA6Q8N4T0 437 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 USP33Q8TEY7 942 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 LEO1Q8WVC0 666 aaPredicted RBP16.55■□□□□ 0.24
MCF2L-228ENST00000487354 ACDQ96AP0 544 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 TRMT2BQ96GJ1 504 aaKnown RBP16.55■□□□□ 0.24
MCF2L-228ENST00000487354 MYRFLQ96LU7 910 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 CYP2S1Q96SQ9 504 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 ASB7Q9H672 318 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 DPP3Q9NY33 737 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 MAGED2Q9UNF1 606 aaPredicted RBP16.55■□□□□ 0.24
MCF2L-228ENST00000487354 PCDHB5Q9Y5E4 795 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 STYXL1Q9Y6J8 313 aa16.55■□□□□ 0.24
MCF2L-228ENST00000487354 GON4LQ3T8J9 2241 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 MYO18AQ92614 2054 aaKnown RBP16.54■□□□□ 0.24
MCF2L-228ENST00000487354 VWA3AA6NCI4 1184 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 K7EQS6 105 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 CSH1P0DML2 217 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 CSH2P0DML3 217 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 CEACAM1P13688 526 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 OPRD1P41143 372 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 DGKEP52429 567 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 AMPD2Q01433 879 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 DDR2Q16832 855 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 DAB2IPQ5VWQ8 1189 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 CC2D1AQ6P1N0 951 aaPredicted RBP16.54■□□□□ 0.24
MCF2L-228ENST00000487354 GPBP1Q86WP2 473 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 METTL23Q86XA0 190 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 THEM5Q8N1Q8 247 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 PDCL2Q8N4E4 241 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 MDGA1Q8NFP4 955 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 CXorf38Q8TB03 319 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 MRPS31Q92665 395 aaKnown RBP16.54■□□□□ 0.24
MCF2L-228ENST00000487354 FAM84AQ96KN4 292 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 SCNM1Q9BWG6 230 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 TMEM9BQ9NQ34 198 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 DUS2Q9NX74 493 aaKnown RBP16.54■□□□□ 0.24
MCF2L-228ENST00000487354 L1RE1Q9UN81 338 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 LOC400499M0QZD8 3231 aa16.54■□□□□ 0.24
MCF2L-228ENST00000487354 C2orf78A6NCI8 922 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 SRRM3A6NNA2 597 aaPredicted RBP16.53■□□□□ 0.24
MCF2L-228ENST00000487354 KPNA7A9QM74 516 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 HCRTO43612 131 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 PRPF40AO75400 957 aaKnown RBP16.53■□□□□ 0.24
MCF2L-228ENST00000487354 TCF3P15923 654 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 CYP2F1P24903 491 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 ADSSP30520 456 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 GBP1P32455 592 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 IRX4P78413 519 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 MESP2Q0VG99 397 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 OSTM1Q86WC4 334 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 SFTPA1Q8IWL2 248 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 DCP1BQ8IZD4 617 aaKnown RBP16.53■□□□□ 0.24
MCF2L-228ENST00000487354 MYCT1Q8N699 235 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 FAM184AQ8NB25 1140 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 ZSWIM2Q8NEG5 633 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 TSTD1Q8NFU3 115 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 OLIG1Q8TAK6 271 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 ATP2A3Q93084 1043 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 CNOT6LQ96LI5 555 aaKnown RBP16.53■□□□□ 0.24
MCF2L-228ENST00000487354 LINC00597Q9H2U6 94 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 TMEM206Q9H813 350 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 PARVGQ9HBI0 331 aa16.53■□□□□ 0.24
MCF2L-228ENST00000487354 ANKRD11Q6UB99 2663 aaPredicted RBP16.52■□□□□ 0.24
MCF2L-228ENST00000487354 TMEM8BA6NDV4 472 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 KHNYNO15037 678 aaKnown RBP16.52■□□□□ 0.24
MCF2L-228ENST00000487354 TRAK2O60296 914 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 SCP2P22307 547 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 ACAT1P24752 427 aaKnown RBP16.52■□□□□ 0.24
MCF2L-228ENST00000487354 INTS6LQ5JSJ4 861 aaKnown RBP16.52■□□□□ 0.24
MCF2L-228ENST00000487354 ANO7Q6IWH7 933 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 TMEM92Q6UXU6 159 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 CYP2U1Q7Z449 544 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 DEFB124Q8NES8 71 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 KIF2CQ99661 725 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 TRPC7Q9HCX4 862 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 ABCB6Q9NP58 842 aa16.52■□□□□ 0.24
MCF2L-228ENST00000487354 FAM13AO94988 1023 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 USP17L7P0C7H9 530 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms