RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 TMEM154Q6P9G4 183 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 DCUN1D2Q6PH85 259 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 LRRC6Q86X45 466 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 FBXO36Q8NEA4 188 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 ATP6V0A1Q93050 837 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 SKA1Q96BD8 255 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 KLF6Q99612 283 aaPredicted RBP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 ZNF341Q9BYN7 854 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 HAPLN2Q9GZV7 340 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 RBAKQ9NYW8 714 aaPredicted RBP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 C3orf70A6NLC5 250 aaPredicted RBP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 H0YIN7 160 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 PLSCR1O15162 318 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 AHCYL1O43865 530 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 DKC1O60832 514 aaKnown RBP eCLIP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 TGDSO95455 350 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 DHRS4L1P0CG22 281 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 SERPINB3P29508 390 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 GDF10P55107 478 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 SESN3P58005 492 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 CDK16Q00536 496 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 KPNB1Q14974 876 aaKnown RBP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 KRT72Q14CN4 511 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 ACSBG2Q5FVE4 666 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 PPP1R15BQ5SWA1 713 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 ARHGEF16Q5VV41 709 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 SNX30Q5VWJ9 437 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 CIAPIN1Q6FI81 312 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 IRGCQ6NXR0 463 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 RINLQ6ZS11 566 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 PALM2Q8IXS6 379 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 NIPA2Q8N8Q9 360 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 SPDYE1Q8NFV5 336 aaPredicted RBP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 NRG4Q8WWG1 115 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 TMEM120AQ9BXJ8 343 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 DNAJC5Q9H3Z4 198 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 C10orf88Q9H8K7 445 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 SLC38A10Q9HBR0 1119 aa12.81□□□□□ -0.36
COL3A1-206ENST00000487010 ALG13Q9NP73 1137 aaKnown RBP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 SAE1Q9UBE0 346 aaPredicted RBP12.81□□□□□ -0.36
COL3A1-206ENST00000487010 LPXNO60711 386 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 KRT36O76013 467 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 LSM8O95777 96 aaKnown RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 MT-ND3P03897 115 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 ASNSP08243 561 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 TSHRP16473 764 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 RPL22P35268 128 aaKnown RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 OTUD4Q01804 1114 aaKnown RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 OCRLQ01968 901 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 TAP1Q03518 808 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 ZBTB16Q05516 673 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 PRKD1Q15139 912 aaPredicted RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 DLGAP5Q15398 846 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 SWSAP1Q6NVH7 229 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 CHSY1Q86X52 802 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 UBR7Q8N806 425 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 ACTL9Q8TC94 416 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 PRR11Q96HE9 360 aaPredicted RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 ZBTB45Q96K62 511 aaPredicted RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 CGRRF1Q99675 332 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 SH3GL3Q99963 347 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 FRMD8P1Q9BZ68 369 aaPredicted RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 TMEM39BQ9GZU3 492 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 CYP26B1Q9NR63 512 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 SEPT9Q9UHD8 586 aaPredicted RBP12.8□□□□□ -0.36
COL3A1-206ENST00000487010 EFR3BQ9Y2G0 817 aa12.8□□□□□ -0.36
COL3A1-206ENST00000487010 TCRBV7S3A2A0A539 114 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 WDR46O15213 610 aaKnown RBP12.79□□□□□ -0.36
COL3A1-206ENST00000487010 PSMG1O95456 288 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 DLDP09622 509 aaKnown RBP12.79□□□□□ -0.36
COL3A1-206ENST00000487010 NEFHP12036 1026 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 SP100P23497 879 aaPredicted RBP12.79□□□□□ -0.36
COL3A1-206ENST00000487010 ETV4P43268 484 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 PSMC4P43686 418 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 NEK3P51956 506 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 DYNLT1P63172 113 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 SLC34A1Q06495 639 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 SPDYE2Q495Y8 402 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 ZBTB41Q5SVQ8 909 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 POLNQ7Z5Q5 900 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 VPS52Q8N1B4 723 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 OR5B17Q8NGF7 314 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 SCG3Q8WXD2 468 aaKnown RBP12.79□□□□□ -0.36
COL3A1-206ENST00000487010 MCUR1Q96AQ8 359 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 TSC22D3Q99576 134 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 MMADHCQ9H3L0 296 aaPredicted RBP12.79□□□□□ -0.36
COL3A1-206ENST00000487010 SYNCQ9H7C4 482 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 FBXO6Q9NRD1 293 aaPredicted RBP12.79□□□□□ -0.36
COL3A1-206ENST00000487010 TAS2R1Q9NYW7 299 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 AGTPBP1Q9UPW5 1226 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 LRCH1Q9Y2L9 728 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 ASB3Q9Y575 518 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 CAPN9O14815 690 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 LDHAP00338 332 aaKnown RBP12.79□□□□□ -0.36
COL3A1-206ENST00000487010 PSAPP07602 524 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 NCOA4Q13772 614 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 BBS9Q3SYG4 887 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 THEMIS2Q5TEJ8 643 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 SCARA3Q6AZY7 606 aa12.79□□□□□ -0.36
COL3A1-206ENST00000487010 SLFN12LQ6IEE8 588 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms