RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ARSHQ5FYA8 562 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 IRF2BP1Q8IU81 584 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 WDR49Q8IV35 697 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 DNAJC9Q8WXX5 260 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 TLR10Q9BXR5 811 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 FAM129AQ9BZQ8 928 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.52□□□□□ -0.56
HDAC6-228ENST00000486227 ASTN1O14525 1302 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 AKR1A1P14550 325 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 ITGA8P53708 1063 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 ERVK-9P63128 1117 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 RAD51Q06609 339 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 KCNMA1Q12791 1236 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 SEPT8Q92599 483 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 AGAP3Q96P47 875 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 SPON2Q9BUD6 331 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 PRG3Q9Y2Y8 225 aaPredicted RBP11.52□□□□□ -0.56
HDAC6-228ENST00000486227 HOXA2O43364 376 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 FKBP1BP68106 108 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 MAPK7Q13164 816 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 KCNT1Q5JUK3 1230 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 WDR59Q6PJI9 974 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 ABTB1Q969K4 478 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-228ENST00000486227 ANKRD27Q96NW4 1050 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 EPAS1Q99814 870 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 SLC13A1Q9BZW2 595 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 RNF208Q9H0X6 261 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 A0A0A6YYK5 440 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-228ENST00000486227 ADAMTS3O15072 1205 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 PAX7P23759 505 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 AMPD2Q01433 879 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 TMEM154Q6P9G4 183 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 RIOX2Q8IUF8 465 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 CREG2Q8IUH2 290 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 TSEN2Q8NCE0 465 aaKnown RBP11.52□□□□□ -0.57
HDAC6-228ENST00000486227 COPS5Q92905 334 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 DDX50Q9BQ39 737 aaKnown RBP11.52□□□□□ -0.57
HDAC6-228ENST00000486227 PLEKHA5Q9HAU0 1116 aa11.52□□□□□ -0.57
HDAC6-228ENST00000486227 LSM7Q9UK45 103 aaKnown RBP11.52□□□□□ -0.57
HDAC6-228ENST00000486227 ATXN2Q99700 1313 aaKnown RBP11.52□□□□□ -0.57
HDAC6-228ENST00000486227 CYBBP04839 570 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 RAG1P15918 1043 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 DEUP1Q05D60 604 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ITGB3BPQ13352 177 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 TTMPQ5BVD1 217 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ATG16L1Q676U5 607 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 MYLK4Q86YV6 388 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 VPS39Q96JC1 886 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 PABPC3Q9H361 631 aaKnown RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 RSAD1Q9HA92 442 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ADAMTSL3P82987 1691 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 GOLGA8RI6L899 631 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 NVLO15381 856 aaKnown RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 CTCFP49711 727 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 SLC29A2Q14542 456 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ARHGEF26Q96DR7 871 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 COLEC11Q9BWP8 271 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 FGFBP2Q9BYJ0 223 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 VAV3Q9UKW4 847 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 IGKV6D-41A0A0C4DH26 115 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 GLTPD2A6NH11 291 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ATP9BO43861 1147 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 PDCD6IPQ8WUM4 868 aaKnown RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ZBTB10Q96DT7 871 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 CYTH2Q99418 400 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 IKZF4Q9H2S9 585 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 VTA1Q9NP79 307 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 SENP1Q9P0U3 644 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ZFATQ9P243 1243 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ANGPTL3Q9Y5C1 460 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 SLIT2O94813 1529 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 TMEM120BA0PK00 339 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 SPECC1L-ADORA2AF8WAN1 911 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 RNF225M0QZC1 329 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 DFFAO00273 331 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 CDH16O75309 829 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 TNFRSF8P28908 595 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 CLEC16AQ2KHT3 1053 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ITPRIPL1Q6GPH6 555 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 KIRREL3Q8IZU9 778 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ABRAQ8N0Z2 381 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 EMC1Q8N766 993 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ACTRT1Q8TDG2 376 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 KLRG1Q96E93 195 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 ZNF512Q96ME7 567 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-228ENST00000486227 TJP2Q9UDY2 1190 aa11.51□□□□□ -0.57
HDAC6-228ENST00000486227 PHLPP1O60346 1717 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 VDRP11473 427 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ADCYAP1R1P41586 468 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ACADSBP45954 432 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 HSD17B4P51659 736 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 KPNA2P52292 529 aaKnown RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 GRIK4Q16099 956 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 MMEL1Q495T6 779 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ACCSLQ4AC99 568 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 TAF1BQ53T94 588 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 ZPBP2Q6X784 338 aa11.5□□□□□ -0.57
HDAC6-228ENST00000486227 RAB44Q7Z6P3 723 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-228ENST00000486227 SLC7A14Q8TBB6 771 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms