RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 ZWILCHQ9H900 591 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 DDX56Q9NY93 547 aaKnown RBP13.71□□□□□ -0.21
SEC13-216ENST00000479868 SNTG2Q9NY99 539 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 HES2Q9Y543 173 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 DNAH12Q6ZR08 3092 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 TRIP12Q14669 1992 aaPredicted RBP13.71□□□□□ -0.22
SEC13-216ENST00000479868 A6NJR5 290 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 PPEF2O14830 753 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 HMGCRP04035 888 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 SMIM10L2AP0DMW4 78 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 SMIM10L2BP0DMW5 78 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 PTPN7P35236 360 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 HIC1Q14526 733 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 ZNF268Q14587 947 aaPredicted RBP13.71□□□□□ -0.22
SEC13-216ENST00000479868 CNGA2Q16280 664 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 IZUMO3Q5VZ72 239 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 POLNQ7Z5Q5 900 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 OSMRQ99650 979 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 TMEM109Q9BVC6 243 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 PPANQ9NQ55 473 aaKnown RBP13.71□□□□□ -0.22
SEC13-216ENST00000479868 FLRT1Q9NZU1 646 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 WDR35Q9P2L0 1181 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 ZNF148Q9UQR1 794 aa13.71□□□□□ -0.22
SEC13-216ENST00000479868 GNEQ9Y223 722 aaKnown RBP13.71□□□□□ -0.22
SEC13-216ENST00000479868 RRP15Q9Y3B9 282 aaKnown RBP13.71□□□□□ -0.22
SEC13-216ENST00000479868 ZNF236Q9UL36 1845 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 RALGAPA2Q2PPJ7 1873 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 RRN3P2A6NIE6 340 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 PIK3R2O00459 728 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 RGS16O15492 202 aaPredicted RBP13.7□□□□□ -0.22
SEC13-216ENST00000479868 STAU1O95793 577 aaKnown RBP13.7□□□□□ -0.22
SEC13-216ENST00000479868 ZSCAN5DPP0CG00 497 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 GABRB2P47870 512 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 CAV1Q03135 178 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 P3H1Q32P28 736 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 DCAF4L1Q3SXM0 396 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 DRICH1Q6PGQ1 229 aaPredicted RBP13.7□□□□□ -0.22
SEC13-216ENST00000479868 CATSPER4Q7RTX7 472 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 NT5DC4Q86YG4 428 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 C12orf29Q8N999 325 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 MDM1Q8TC05 714 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 MCRS1Q96EZ8 462 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 RNF19AQ9NV58 838 aa13.7□□□□□ -0.22
SEC13-216ENST00000479868 RASGRF2O14827 1237 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 F2P00734 622 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 ETS1P14921 441 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 AUHQ13825 339 aaKnown RBP13.69□□□□□ -0.22
SEC13-216ENST00000479868 KYNUQ16719 465 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 C6orf118Q5T5N4 469 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 SLC27A1Q6PCB7 646 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 GCOM2Q9BZD3 368 aaPredicted RBP13.69□□□□□ -0.22
SEC13-216ENST00000479868 SAE1Q9UBE0 346 aaPredicted RBP13.69□□□□□ -0.22
SEC13-216ENST00000479868 TSPAN16Q9UKR8 245 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 ANKRD65E5RJM6 399 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 E7EVH7 732 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 TTC4O95801 387 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 CD48P09326 243 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 DYNLT1P63172 113 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 LMNB2Q03252 620 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 TAF5Q15542 800 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 OASLQ15646 514 aaKnown RBP13.69□□□□□ -0.22
SEC13-216ENST00000479868 LONRF1Q17RB8 773 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 GLRA4Q5JXX5 417 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 MORN1Q5T089 497 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 OLFML2BQ68BL8 750 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 HIBCHQ6NVY1 386 aaPredicted RBP13.69□□□□□ -0.22
SEC13-216ENST00000479868 NLRP14Q86W24 1093 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 ALLCQ8N6M5 410 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 MYCBPAPQ8TBZ2 947 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 NRCAMQ92823 1304 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 PIWIL1Q96J94 861 aaKnown RBP13.69□□□□□ -0.22
SEC13-216ENST00000479868 SNX27Q96L92 541 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 CCT8L2Q96SF2 557 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 ADAM7Q9H2U9 754 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 TUBGCP4Q9UGJ1 667 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 PCSK1NQ9UHG2 260 aa13.69□□□□□ -0.22
SEC13-216ENST00000479868 MBLAC1A4D2B0 266 aaPredicted RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 EBAG9O00559 213 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 PFKMP08237 780 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 CYP2C9P11712 490 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 VCPP55072 806 aaKnown RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 MYO1EQ12965 1108 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 TNFAIP8L3Q5GJ75 292 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 FAM102AQ5T9C2 384 aaPredicted RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 LCLAT1Q6UWP7 414 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 TLK2Q86UE8 772 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 C18orf25Q96B23 403 aaPredicted RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 MRPL45Q9BRJ2 306 aaKnown RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 TMEM121Q9BTD3 319 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 NT5C1AQ9BXI3 368 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 TSPYL1Q9H0U9 437 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 NXF3Q9H4D5 531 aaKnown RBP13.68□□□□□ -0.22
SEC13-216ENST00000479868 SLC5A4Q9NY91 659 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 NME7Q9Y5B8 376 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 SNX9Q9Y5X1 595 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 E5RJQ4 531 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 TRAPPC3O43617 180 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 AGTP01019 485 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 KRT7P08729 469 aa13.68□□□□□ -0.22
SEC13-216ENST00000479868 KDELR1P24390 212 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms