RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 MPHOSPH9Q99550 1183 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 UNC45AQ9H3U1 944 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 ZHX3Q9H4I2 956 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 KIF17Q9P2E2 1029 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 SHOC2Q9UQ13 582 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 TBC1D30Q9Y2I9 924 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 CRYL1Q9Y2S2 319 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 CDY1Q9Y6F8 540 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 SCINQ9Y6U3 715 aa6□□□□□ -1.45
UPF3B-203ENST00000478840 H7C4K7 107 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 POLRMTO00411 1230 aaKnown RBP5.99□□□□□ -1.45
UPF3B-203ENST00000478840 RRP9O43818 475 aaKnown RBP5.99□□□□□ -1.45
UPF3B-203ENST00000478840 IPO13O94829 963 aaKnown RBP5.99□□□□□ -1.45
UPF3B-203ENST00000478840 ATICP31939 592 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 EPHB4P54760 987 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 LINC00310P59036 64 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 PPP2CBP62714 309 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 PPP2CAP67775 309 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 FAM110CQ1W6H9 321 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 FAXCQ5TGI0 409 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 METRNLQ641Q3 311 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 RETSATQ6NUM9 610 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 TMPRSS9Q7Z410 1059 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 TMTC1Q8IUR5 882 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 FTSJ3Q8IY81 847 aaKnown RBP5.99□□□□□ -1.45
UPF3B-203ENST00000478840 THAP4Q8WY91 577 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 HERVK_113Q902F9 699 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 SDCCAG3Q96C92 435 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 LMF1Q96S06 567 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 SMOQ99835 787 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 PYM1Q9BRP8 204 aaKnown RBP5.99□□□□□ -1.45
UPF3B-203ENST00000478840 PLA2G12BQ9BX93 195 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 SLC46A2Q9BY10 475 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 PABPC3Q9H361 631 aaKnown RBP5.99□□□□□ -1.45
UPF3B-203ENST00000478840 SPON1Q9HCB6 807 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 WASH6PQ9NQA3 447 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 PRDM8Q9NQV8 689 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 HELLSQ9NRZ9 838 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 SLC13A4Q9UKG4 626 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 HS3ST4Q9Y661 456 aa5.99□□□□□ -1.45
UPF3B-203ENST00000478840 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 PCDH17O14917 1159 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 MFAP3LO75121 409 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 COQ9O75208 318 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 SOAT2O75908 522 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 RHOBTB3O94955 611 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 TSPAN15O95858 294 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 C1QTNF9P0C862 333 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 PECAM1P16284 738 aaPredicted RBP5.98□□□□□ -1.45
UPF3B-203ENST00000478840 CHN2P52757 468 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 LOXL3P58215 753 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 GRM7Q14831 915 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 TIGD6Q17RP2 521 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 ADCK5Q3MIX3 580 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 ZIK1Q3SY52 487 aaPredicted RBP5.98□□□□□ -1.45
UPF3B-203ENST00000478840 KLHL17Q6TDP4 642 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 ARHGEF18Q6ZSZ5 1173 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 SYT12Q8IV01 421 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 LGI4Q8N135 537 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 OR1N1Q8NGS0 311 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 ASB12Q8WXK4 309 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 TRIB1Q96RU8 372 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 PNKPQ96T60 521 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 TRIM5Q9C035 493 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 TWSG1Q9GZX9 223 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 MEGF9Q9H1U4 602 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 MLXIPQ9HAP2 919 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 GGA3Q9NZ52 723 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 POGKQ9P215 609 aa5.98□□□□□ -1.45
UPF3B-203ENST00000478840 B9A039 149 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 E7ENX8 843 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 HOXC11O43248 304 aaPredicted RBP5.97□□□□□ -1.45
UPF3B-203ENST00000478840 DHHO43323 396 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 ACTL6BO94805 426 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 CENPBP07199 599 aaPredicted RBP5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TNFAIP3P21580 790 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TXKP42681 527 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 RXRGP48443 463 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 DGKEP52429 567 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 MPP1Q00013 466 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 SATB1Q01826 763 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TAP2Q03519 686 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TLE2Q04725 743 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 ZNF844Q08AG5 666 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 SURF1Q15526 300 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TRIM60Q495X7 471 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 FAM102AQ5T9C2 384 aaPredicted RBP5.97□□□□□ -1.45
UPF3B-203ENST00000478840 MANEALQ5VSG8 457 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 AGAP9Q5VTM2 703 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 NAIF1Q69YI7 327 aaPredicted RBP5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TAPT1Q6NXT6 567 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 TAF2Q6P1X5 1199 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 HTR3DQ70Z44 454 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 ZNF280BQ86YH2 543 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 SLC44A2Q8IWA5 706 aaPredicted RBP5.97□□□□□ -1.45
UPF3B-203ENST00000478840 RHOT2Q8IXI1 618 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 PSD4Q8NDX1 1056 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 ZDHHC12Q96GR4 267 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 LRIG1Q96JA1 1093 aa5.97□□□□□ -1.45
UPF3B-203ENST00000478840 ZNF668Q96K58 619 aaPredicted RBP5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms