RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TRIOO75962 3097 aa7.48□□□□□ -1.21
CCDC88A-213ENST00000476903 DENND4AQ7Z401 1863 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 FAM86C2PA6NEL3 165 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PP2D1A8MPX8 630 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PRR33A8MZF0 331 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 LOC730098B7Z3J9 87 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 ACKR2O00590 384 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 SOD2P04179 222 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 SSBP05455 408 aaKnown RBP eCLIP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 URODP06132 367 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 C1QTNF9P0C862 333 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 GRIK3Q13003 919 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 DMP1Q13316 513 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PTPN14Q15678 1187 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 IL17AQ16552 155 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 DCAF4L1Q3SXM0 396 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 HERC4Q5GLZ8 1057 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 LARP1BQ659C4 914 aaKnown RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 ARL6IP4Q66PJ3 421 aaKnown RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 CES5AQ6NT32 575 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 APBB1IPQ7Z5R6 666 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 CDR2LQ86X02 465 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 AUTS2Q8WXX7 1259 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 DRC1Q96MC2 740 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 NECTIN4Q96NY8 510 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 LRFN3Q9BTN0 628 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 MMTAG2Q9BU76 263 aaKnown RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 KIFC3Q9BVG8 833 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 HERC2P3Q9BVR0 1158 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 TIPINQ9BVW5 301 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 COLEC11Q9BWP8 271 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 APOL5Q9BWW9 433 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 VN1R3Q9BXE9 311 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 NT5C3AQ9H0P0 336 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 ADAM7Q9H2U9 754 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PDZD7Q9H5P4 517 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 MARCH5Q9NX47 278 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 MIOSQ9NXC5 875 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PCOLCE2Q9UKZ9 415 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PRG3Q9Y2Y8 225 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PHLPP2Q6ZVD8 1323 aa7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 PDCD11Q14690 1871 aaKnown RBP7.47□□□□□ -1.21
CCDC88A-213ENST00000476903 MYH15Q9Y2K3 1946 aa7.46□□□□□ -1.21
CCDC88A-213ENST00000476903 VWA3AA6NCI4 1184 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 CCDC169A6NNP5 214 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 E9PMD0 336 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 K7ERI5 159 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 SLC26A4O43511 780 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 HIP1RO75146 1068 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 BMP15O95972 392 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 SLFN14P0C7P3 912 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 EPCAMP16422 314 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 ITIH2P19823 946 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 KLRC2P26717 231 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 CDC25AP30304 524 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 MTHFRP42898 656 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 GLUD2P49448 558 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 PEX3P56589 373 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 TUSC3Q13454 348 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 ZRSR1Q15695 479 aaKnown RBP7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 HYIQ5T013 277 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 ATF7IP2Q5U623 682 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 KIAA1841Q6NSI8 718 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 RINT1Q6NUQ1 792 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 BRAPQ7Z569 592 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 CABP7Q86V35 215 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 SPACA3Q8IXA5 215 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 RNF168Q8IYW5 571 aaPredicted RBP7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 GSTCDQ8NEC7 633 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 SLC22A17Q8WUG5 538 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 CDK5RAP3Q96JB5 506 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 RPGRIP1Q96KN7 1286 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 AK8Q96MA6 479 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 RIPOR3Q96MK2 946 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 KLHL5Q96PQ7 755 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 C17orf75Q9HAS0 396 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 ABCB6Q9NP58 842 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 KRT82Q9NSB4 513 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 MUTYHQ9UIF7 546 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 KCNG1Q9UIX4 513 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 NR2E1Q9Y466 385 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 VWA8A3KMH1 1905 aa7.46□□□□□ -1.22
CCDC88A-213ENST00000476903 TECTAO75443 2155 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 RECQL4O94761 1208 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 EFEMP2O95967 443 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 THP07101 528 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 CNPP09543 421 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 PDCP20941 246 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 GUCY2CP25092 1073 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 NPTX2P47972 431 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 CLCN4P51793 760 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 DSG1Q02413 1049 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 CREMQ03060 361 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 CUL4AQ13619 759 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 HSP90AA2PQ14568 343 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 NKPD1Q17RQ9 610 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 RPS26P11Q5JNZ5 115 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 ATAT1Q5SQI0 421 aa7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 RARS2Q5T160 578 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-213ENST00000476903 NT5DC1Q5TFE4 455 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms