RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 DOCK3Q8IZD9 2030 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SCN7AQ01118 1682 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SNED1Q8TER0 1413 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CYB561D2O14569 222 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 PRPSAP2O60256 369 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 GGPS1O95749 300 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 PGK1P00558 417 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 PYGBP11216 843 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SERPINB3P29508 390 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 EIF3BP55884 814 aaKnown RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 ZNF280AP59817 542 aaPredicted RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 PTENP60484 403 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CRHR2Q13324 411 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CYTH1Q15438 398 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 TCHHL1Q5QJ38 904 aaPredicted RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 RWDD4Q6NW29 188 aaKnown RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 GRK7Q8WTQ7 553 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SNRNP27Q8WVK2 155 aaKnown RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CAVIN3Q969G5 261 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CFAP57Q96MR6 1250 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 JPH1Q9HDC5 661 aaPredicted RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 FAM53CQ9NYF3 392 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SLC17A7Q9P2U7 560 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 PCDHA10Q9Y5I2 948 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CUL9Q8IWT3 2517 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 FAM237BA0A1B0GVD1 139 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 FAM47DPA6NHR8 397 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 TRIM49D1C9J1S8 452 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 PPP1R12AO14974 1030 aaPredicted RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 ENTPD3O75355 529 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SRGAP2BP0DMP2 458 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 NQO1P15559 274 aaKnown RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 TPH1P17752 444 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SREBF1P36956 1147 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 VEGFBP49765 207 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 HADHQ16836 314 aaKnown RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 DEFB115Q30KQ5 88 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SH3PXD2AQ5TCZ1 1133 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 MIS18BP1Q6P0N0 1132 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 C1orf186Q6ZWK4 172 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SAPCD2Q86UD0 394 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CCDC60Q8IWA6 550 aaPredicted RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 RHOT1Q8IXI2 618 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 FITM2Q8N6M3 262 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 C12orf29Q8N999 325 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 ATL2Q8NHH9 583 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CEP70Q8NHQ1 597 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 TCP10LQ8TDR4 215 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 SH3GL2Q99962 352 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 KIAA1683Q9H0B3 1180 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CARD9Q9H257 536 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 PIF1Q9H611 641 aa5.23□□□□□ -1.57
CCDC39-204ENST00000476379 ACTR5Q9H9F9 607 aaPredicted RBP5.23□□□□□ -1.57
CCDC39-204ENST00000476379 CELSR3Q9NYQ7 3312 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 LAMB2P55268 1798 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 AIM2O14862 343 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 MAPK13O15264 365 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ASAP2O43150 1006 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 B4GALT5O43286 388 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 AP1G2O75843 785 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ITGB3P05106 788 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 CTSHP09668 335 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 CXCL8P10145 99 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 MYL2P10916 166 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 PDGFRAP16234 1089 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 DRD4P21917 467 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 SERPINB4P48594 390 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 COPS2P61201 443 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 RPL10AP62906 217 aaKnown RBP5.22□□□□□ -1.57
CCDC39-204ENST00000476379 FMO1Q01740 532 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 PTK7Q13308 1070 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 FBXO48Q5FWF7 155 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 FIGNQ5HY92 759 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 NLRP9Q7RTR0 991 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 SPATA24Q86W54 205 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 IFNEQ86WN2 208 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 FAM131BQ86XD5 332 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ETNPPLQ8TBG4 499 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 PLEKHO2Q8TD55 490 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ACTRT1Q8TDG2 376 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 P3H4Q92791 437 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 IQCDQ96DY2 449 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 CCDC97Q96F63 343 aaPredicted RBP5.22□□□□□ -1.57
CCDC39-204ENST00000476379 HERPUD2Q9BSE4 406 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ATP6V0A4Q9HBG4 840 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ZNF302Q9NR11 478 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ZMYND8Q9ULU4 1186 aaPredicted RBP5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ARL2BPQ9Y2Y0 163 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 MIF4GDA9UHW6 222 aaKnown RBP5.22□□□□□ -1.57
CCDC39-204ENST00000476379 KCNK1O00180 336 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ITGBL1O95965 494 aaPredicted RBP5.22□□□□□ -1.57
CCDC39-204ENST00000476379 PGM1P36871 562 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 RFC5P40937 340 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 CHI3L2Q15782 390 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 ZNF667Q5HYK9 610 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 FAM117BQ6P1L5 589 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 CD99L2Q8TCZ2 262 aa5.22□□□□□ -1.57
CCDC39-204ENST00000476379 USP13Q92995 863 aaPredicted RBP5.22□□□□□ -1.57
CCDC39-204ENST00000476379 MMP19Q99542 508 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms