RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MNAT1P51948 309 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 RBP5P82980 135 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 DSTYKQ6XUX3 929 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 CACNA2D3Q8IZS8 1091 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 FBXL18Q96ME1 805 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 ST6GALNAC4Q9H4F1 302 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 RAB6BQ9NRW1 208 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 DOCK5Q9H7D0 1870 aa14.44□□□□□ -0.1
CCDC88A-211ENST00000471947 M0QZ92 97 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 MOCS2O96007 188 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 PECAM1P16284 738 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 ACO1P21399 889 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 AARSP49588 968 aaKnown RBP eCLIP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 MBTD1Q05BQ5 628 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 ARHGAP1Q07960 439 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 PPP1R26Q5T8A7 1209 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 ZPBP2Q6X784 338 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 SPOCD1Q6ZMY3 1216 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 LRRC4Q9HBW1 653 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 FGFR1OP2Q9NVK5 253 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 FEZ2Q9UHY8 353 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 CPSF3Q9UKF6 684 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 ADAMTS5Q9UNA0 930 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 COQ4Q9Y3A0 265 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 MYH9P35579 1960 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 TMEM120BA0PK00 339 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 TCP11X1B4DZS4 312 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 CEP290O15078 2479 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 IGFBP6P24592 240 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 YWHAEP62258 255 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 QPCTQ16769 361 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 MTHFD1LQ6UB35 978 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 MON1BQ7L1V2 547 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 EDEM1Q92611 657 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 P3H4Q92791 437 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 TRIM56Q9BRZ2 755 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 NIFKQ9BYG3 293 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 ARFGEF1Q9Y6D6 1849 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 A6NJR5 290 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 GRIN3BO60391 1043 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 ZBED1O96006 694 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 LMO2P25791 158 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 CCDC125Q86Z20 511 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 L3MBTL3Q96JM7 780 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 PRM3Q9NNZ6 103 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 PDLIM7Q9NR12 457 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 DCTN4Q9UJW0 460 aa14.43□□□□□ -0.1
CCDC88A-211ENST00000471947 MCM3APO60318 1980 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 CCDC195A0A1B0GUA6 201 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 GMNCA6NCL1 334 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 C22orf31O95567 290 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 ANXA13P27216 316 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 CRADDP78560 199 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 ITIH3Q06033 890 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 NFIL3Q16649 462 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 EML3Q32P44 896 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 HHATQ5VTY9 493 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 APOL2Q9BQE5 337 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SLC13A1Q9BZW2 595 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 CYTH4Q9UIA0 394 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SIX4Q9UIU6 781 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 FNDC3AQ9Y2H6 1198 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 MYO18AQ92614 2054 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SOCS7O14512 581 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 HUS1O60921 280 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 HSPA6P17066 643 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 IL1R2P27930 398 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 ECHS1P30084 290 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 MAGEA4P43358 317 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 GTF2A2P52657 109 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SESN2P58004 480 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SH3D19Q5HYK7 790 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 GKAP1Q5VSY0 366 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 ZDHHC24Q6UX98 284 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SRLQ86TD4 932 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SCN4BQ8IWT1 228 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 RASGEF1CQ8N431 466 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 PPM1NQ8N819 430 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SLC2A14Q8TDB8 520 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 USP33Q8TEY7 942 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 FAM172AQ8WUF8 416 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 GAD1Q99259 594 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 IQCGQ9H095 443 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 PDZD7Q9H5P4 517 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 SNAI1O95863 264 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 GHRP10912 638 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 ICAM3P32942 547 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 GDF10P55107 478 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 CENPCQ03188 943 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 EFTUD2Q15029 972 aaKnown RBP eCLIP14.42□□□□□ -0.18e-7■■■■□ 19.8
CCDC88A-211ENST00000471947 PPP2R5EQ16537 467 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 PTGISQ16647 500 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 USP50Q70EL3 339 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 LRRC34Q8IZ02 419 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 CCDC110Q8TBZ0 833 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 DEPDC1BQ8WUY9 529 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 DDX27Q96GQ7 796 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 RBM41Q96IZ5 413 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 IFT122Q9HBG6 1241 aa14.42□□□□□ -0.1
CCDC88A-211ENST00000471947 USP18Q9UMW8 372 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms