RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SYNCQ9H7C4 482 aa9.92□□□□□ -0.82
VPS52-216ENST00000471309 CYLDQ9NQC7 956 aa9.92□□□□□ -0.82
VPS52-216ENST00000471309 FAM49BQ9NUQ9 324 aa9.92□□□□□ -0.82
VPS52-216ENST00000471309 CACNG4Q9UBN1 327 aa9.92□□□□□ -0.82
VPS52-216ENST00000471309 IP6K2Q9UHH9 426 aa9.92□□□□□ -0.82
VPS52-216ENST00000471309 TBX21Q9UL17 535 aa9.92□□□□□ -0.82
VPS52-216ENST00000471309 TTC7AQ9ULT0 858 aaPredicted RBP9.92□□□□□ -0.82
VPS52-216ENST00000471309 SCN5AQ14524 2016 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 M0QZQ0 153 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 ENPP3O14638 875 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 HOXA2O43364 376 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 B3GAT3O94766 335 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 CYP11A1P05108 521 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 CCDC130P13994 396 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 IBSPP21815 317 aaPredicted RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 RFC2P35250 354 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 MARCKSL1P49006 195 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 PEX5P50542 639 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 SNX16P57768 344 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 BST2Q10589 180 aaKnown RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 ZNF268Q14587 947 aaPredicted RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 TIGD5Q53EQ6 642 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 CYP4A22Q5TCH4 519 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 DCAF12L1Q5VU92 463 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 DCLRE1AQ6PJP8 1040 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 CD300LGQ6UXG3 332 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 PHLDB2Q86SQ0 1253 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 XYLT1Q86Y38 959 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 ZDHHC17Q8IUH5 632 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 MMGT1Q8N4V1 131 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 GPR161Q8N6U8 529 aaKnown RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 NIPA2Q8N8Q9 360 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 ANKRD52Q8NB46 1076 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 NOA1Q8NC60 698 aaKnown RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 UBA3Q8TBC4 463 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 FNIP1Q8TF40 1166 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 DIS3LQ8TF46 1054 aaKnown RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 SLC35F5Q8WV83 523 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 MCRS1Q96EZ8 462 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 MS4A14Q96JA4 679 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 MCEEQ96PE7 176 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 HNRNPABQ99729 332 aaKnown RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.91□□□□□ -0.821e-7■■■■□ 22
VPS52-216ENST00000471309 TRIM7Q9C029 511 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 C11orf49Q9H6J7 331 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 TBC1D13Q9NVG8 400 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 DDX43Q9NXZ2 648 aaKnown RBP9.91□□□□□ -0.82
VPS52-216ENST00000471309 EHD2Q9NZN4 543 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 TJP2Q9UDY2 1190 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 DSEQ9UL01 958 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 PCDHA3Q9Y5H8 950 aa9.91□□□□□ -0.82
VPS52-216ENST00000471309 SIGLEC16A6NMB1 481 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 E5RJQ4 531 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 PSTPIP1O43586 416 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 CEP104O60308 925 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 B4GALT3O60512 393 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 GJB6O95452 261 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 PDGFRBP09619 1106 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 KRT3P12035 628 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 PTPN1P18031 435 aaKnown RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 TYMPP19971 482 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 IGFBP6P24592 240 aaPredicted RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 PCSK1P29120 753 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 TKTP29401 623 aaKnown RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 PLA2G4AP47712 749 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 RPL34P49207 117 aaKnown RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 CTCFP49711 727 aaPredicted RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 RWDD2BP57060 319 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 RPL7AP62424 266 aaKnown RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 PDE4CQ08493 712 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 C2orf54Q08AI8 447 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 ZNF252P-AS1Q0IIN9 211 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 PIGHQ14442 188 aaPredicted RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 TCTN1Q2MV58 587 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 DCUN1D2Q6PH85 259 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 TMEM110Q86TL2 294 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 METTL23Q86XA0 190 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 CPNE8Q86YQ8 564 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 COLGALT2Q8IYK4 626 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 ABI1Q8IZP0 508 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 FUKQ8N0W3 1084 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 CRIPAKQ8N1N5 446 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 SLC2A14Q8TDB8 520 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 KRT35Q92764 455 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 SCLYQ96I15 445 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 SUSD3Q96L08 255 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 RNPC3Q96LT9 517 aaKnown RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 NAP1L3Q99457 506 aaPredicted RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 SYT15Q9BQS2 421 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 MRPL9Q9BYD2 267 aaKnown RBP9.9□□□□□ -0.82
VPS52-216ENST00000471309 PPP1R12CQ9BZL4 782 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 PRDM10Q9NQV6 1147 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 SMARCAL1Q9NZC9 954 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 TMEM59LQ9UK28 342 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 CDH9Q9ULB4 789 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS52-216ENST00000471309 PCDHB7Q9Y5E2 793 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 MICAL3Q7RTP6 2002 aa9.9□□□□□ -0.82
VPS52-216ENST00000471309 PATJQ8NI35 1801 aa9.89□□□□□ -0.83
VPS52-216ENST00000471309 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms