RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CAV1Q03135 178 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 GRM1Q13255 1194 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 SLC10A6Q3KNW5 377 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 EAPPQ56P03 285 aaPredicted RBP20.09■□□□□ 0.81
VIM-203ENST00000469543 XYLT1Q86Y38 959 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 C4orf33Q8N1A6 199 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 CXorf38Q8TB03 319 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 HEXIM2Q96MH2 286 aaKnown RBP20.09■□□□□ 0.81
VIM-203ENST00000469543 VPS37BQ9H9H4 285 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 LOC285556D6RIA3 1793 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 EXOC1LA0A1B0GW35 172 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 CCT8L1PA6NM43 557 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 ARF4P18085 180 aaPredicted RBP20.09■□□□□ 0.81
VIM-203ENST00000469543 CDH5P33151 784 aaPredicted RBP20.09■□□□□ 0.81
VIM-203ENST00000469543 PDIA2Q13087 525 aaKnown RBP20.09■□□□□ 0.81
VIM-203ENST00000469543 CDO1Q16878 200 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 LPIN3Q9BQK8 851 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 CALN1Q9BXU9 219 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 SLC40A1Q9NP59 571 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 SAMD15Q9P1V8 674 aa20.09■□□□□ 0.81
VIM-203ENST00000469543 OTOFQ9HC10 1997 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 SIGLEC16A6NMB1 481 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 SSTR1P30872 391 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 EFTUD2Q15029 972 aaKnown RBP eCLIP20.08■□□□□ 0.811e-6■■■■■ 65.9
VIM-203ENST00000469543 PKN2Q16513 984 aaKnown RBP20.08■□□□□ 0.81
VIM-203ENST00000469543 NPNTQ6UXI9 565 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 FAM47EQ6ZV65 393 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 ARMCX2Q7L311 632 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 ANKRD13AQ8IZ07 590 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 C2orf40Q9H1Z8 148 aa20.08■□□□□ 0.81
VIM-203ENST00000469543 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.08■□□□□ 0.8
VIM-203ENST00000469543 MICAL2O94851 1124 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 GJA5P36382 358 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 YWHAEP62258 255 aaKnown RBP20.08■□□□□ 0.8
VIM-203ENST00000469543 AMHR2Q16671 573 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 C15orf59Q2T9L4 293 aaPredicted RBP20.08■□□□□ 0.8
VIM-203ENST00000469543 FNBP1LQ5T0N5 605 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 RNASEH2BQ5TBB1 312 aaKnown RBP20.08■□□□□ 0.8
VIM-203ENST00000469543 TRNP1Q6NT89 227 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 CROCCP2Q86T23 111 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 UNC45BQ8IWX7 931 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 AFG1LQ8WV93 481 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 CDCA5Q96FF9 252 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 ZNF518BQ9C0D4 1074 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 AGAP1Q9UPQ3 857 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 TNFSF13BQ9Y275 285 aa20.08■□□□□ 0.8
VIM-203ENST00000469543 A0A1W2PPM1 405 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 SPDYE5A6NIY4 337 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 M0QYV0 167 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 HBP1O60381 514 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 SNX3O60493 162 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 CDH16O75309 829 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 MIPP30301 263 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 ADCYAP1R1P41586 468 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 ILDR2Q71H61 639 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 ARMC9Q7Z3E5 817 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 MAML1Q92585 1016 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 C12orf65Q9H3J6 166 aaKnown RBP20.07■□□□□ 0.8
VIM-203ENST00000469543 EURLQ9NYK6 297 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 SLC25A27O95847 323 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 CYP3A5P20815 502 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 KDELR1P24390 212 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 FOXN2P32314 431 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 WDR4P57081 412 aaKnown RBP20.07■□□□□ 0.8
VIM-203ENST00000469543 PTPN11Q06124 597 aaPredicted RBP20.07■□□□□ 0.8
VIM-203ENST00000469543 ARHGAP1Q07960 439 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 TFDP1Q14186 410 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 LRRC38Q5VT99 294 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 FAM71DQ8N9W8 422 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 KCTD6Q8NC69 237 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 SLC35B2Q8TB61 432 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 PEBP4Q96S96 227 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 BCO2Q9BYV7 579 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 PDZD7Q9H5P4 517 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 ERAP1Q9NZ08 941 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 ANK1P16157 1881 aa20.07■□□□□ 0.8
VIM-203ENST00000469543 LGALS2P05162 132 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 RGS7P49802 495 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 ZC3H18Q86VM9 953 aaKnown RBP20.06■□□□□ 0.8
VIM-203ENST00000469543 ANKS4BQ8N8V4 417 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 CCDC134Q9H6E4 229 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 HCRTO43612 131 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 STX2P32856 288 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 GPD2P43304 727 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 CTCFP49711 727 aaPredicted RBP20.06■□□□□ 0.8
VIM-203ENST00000469543 TTLL4Q14679 1199 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 TMEM176AQ96HP8 235 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 HPDLQ96IR7 371 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 TGS1Q96RS0 853 aaKnown RBP20.06■□□□□ 0.8
VIM-203ENST00000469543 WDR83Q9BRX9 315 aaKnown RBP20.06■□□□□ 0.8
VIM-203ENST00000469543 CD248Q9HCU0 757 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 HES2Q9Y543 173 aa20.06■□□□□ 0.8
VIM-203ENST00000469543 CILPO75339 1184 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 RASSF9O75901 435 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 IBSPP21815 317 aaPredicted RBP20.05■□□□□ 0.8
VIM-203ENST00000469543 GPX6P59796 221 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 MYO1EQ12965 1108 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 FAM102AQ5T9C2 384 aaPredicted RBP20.05■□□□□ 0.8
VIM-203ENST00000469543 CGB2Q6NT52 195 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 PRCCQ92733 491 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms