RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CYP2F1P24903 491 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 MTHFRP42898 656 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 VASPP50552 380 aaPredicted RBP12.72□□□□□ -0.37
VPS13D-204ENST00000469054 TPM4P67936 248 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 CYP27A1Q02318 531 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 KCNMA1Q12791 1236 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 ZNF394Q53GI3 561 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 FKBP15Q5T1M5 1219 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 APTXQ7Z2E3 356 aaKnown RBP12.72□□□□□ -0.37
VPS13D-204ENST00000469054 UBR7Q8N806 425 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 KAT5Q92993 513 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 FAM81BQ96LP2 452 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 B3GNT5Q9BYG0 378 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 ELOVL4Q9GZR5 314 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 DNAI2Q9GZS0 605 aa12.72□□□□□ -0.37
VPS13D-204ENST00000469054 UBE2TQ9NPD8 197 aaPredicted RBP12.72□□□□□ -0.37
VPS13D-204ENST00000469054 COL6A3P12111 3177 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 GOLGA6L19H0YKK7 550 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 SOAT2O75908 522 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 BMP1P13497 986 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 ACO1P21399 889 aaKnown RBP12.71□□□□□ -0.37
VPS13D-204ENST00000469054 BDNFP23560 247 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 MAGEA11P43364 429 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 RAD23BP54727 409 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 EPHB3P54753 998 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 ZNF445P59923 1031 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 RPL10AP62906 217 aaKnown RBP12.71□□□□□ -0.37
VPS13D-204ENST00000469054 CBX2Q14781 532 aaPredicted RBP12.71□□□□□ -0.37
VPS13D-204ENST00000469054 IQCEQ6IPM2 695 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 DPY19L2P1Q6NXN4 242 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 VSTM1Q6UX27 236 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 ENOSF1Q7L5Y1 443 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 ELMOD1Q8N336 334 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 C12orf29Q8N999 325 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 JAKMIP2Q96AA8 810 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 TMEM176AQ96HP8 235 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 ZNF512Q96ME7 567 aaPredicted RBP12.71□□□□□ -0.37
VPS13D-204ENST00000469054 KREMEN1Q96MU8 473 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 WDR6Q9NNW5 1121 aaKnown RBP12.71□□□□□ -0.37
VPS13D-204ENST00000469054 CEP72Q9P209 647 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 DNMT3BQ9UBC3 853 aaKnown RBP12.71□□□□□ -0.37
VPS13D-204ENST00000469054 APEX2Q9UBZ4 518 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 PCDHB4Q9Y5E5 795 aa12.71□□□□□ -0.37
VPS13D-204ENST00000469054 TSC2P49815 1807 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 BRWD1Q9NSI6 2320 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 LGALS16A8MUM7 142 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 CLDN5O00501 218 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 CCDC130P13994 396 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 PTPN2P17706 415 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 ATF6P18850 670 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 GRIK1P39086 918 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 GPR15P49685 360 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 MFAP3P55082 362 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 APBA1Q02410 837 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 UBXN1Q04323 297 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 TJAP1Q5JTD0 557 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 GJB7Q6PEY0 223 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 TMEM270Q6UE05 265 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 PAQR9Q6ZVX9 377 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 GRASPQ7Z6J2 395 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-204ENST00000469054 DNAJB7Q7Z6W7 309 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-204ENST00000469054 ITIH5Q86UX2 942 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 FUKQ8N0W3 1084 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 SLC4A11Q8NBS3 891 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 CYFIP2Q96F07 1278 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 HEXIM2Q96MH2 286 aaKnown RBP12.7□□□□□ -0.38
VPS13D-204ENST00000469054 HNRNPABQ99729 332 aaKnown RBP12.7□□□□□ -0.38
VPS13D-204ENST00000469054 MED10Q9BTT4 135 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 PHF7Q9BWX1 381 aaPredicted RBP12.7□□□□□ -0.38
VPS13D-204ENST00000469054 ZNF518BQ9C0D4 1074 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 POMKQ9H5K3 350 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 SIX2Q9NPC8 291 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 FAM49BQ9NUQ9 324 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 HCFC1R1Q9NWW0 138 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 ASB3Q9Y575 518 aa12.7□□□□□ -0.38
VPS13D-204ENST00000469054 ATP8B3O60423 1300 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 TRIM66O15016 1216 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 RHOP08100 348 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 NTHL1P78549 312 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 VEPH1Q14D04 833 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 DDR2Q16832 855 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 FILIP1LQ4L180 1135 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 PABPC1LQ4VXU2 614 aaKnown RBP12.69□□□□□ -0.38
VPS13D-204ENST00000469054 KLHDC7AQ5VTJ3 777 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 SDHAF4Q5VUM1 108 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 FAM35AQ86V20 835 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 SCN4BQ8IWT1 228 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 SLC2A14Q8TDB8 520 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 GIPC2Q8TF65 315 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 PSMG2Q969U7 264 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 SMARCD1Q96GM5 515 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 C8orf48Q96LL4 319 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 CORO1BQ9BR76 489 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 LSM14BQ9BX40 385 aaKnown RBP12.69□□□□□ -0.38
VPS13D-204ENST00000469054 PLCB1Q9NQ66 1216 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 AVENQ9NQS1 362 aaPredicted RBP12.69□□□□□ -0.38
VPS13D-204ENST00000469054 DNAJC12Q9UKB3 198 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 CNTN6Q9UQ52 1028 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 XIRP2A4UGR9 3374 aa12.69□□□□□ -0.38
VPS13D-204ENST00000469054 CLUHO75153 1309 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms