RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 NRLP54845 237 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 SNRPFP62306 86 aaKnown RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 PUM1Q14671 1186 aaKnown RBP eCLIP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 FOXD4L6Q3SYB3 417 aaPredicted RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 CFAP221Q4G0U5 840 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 SDHAF4Q5VUM1 108 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 ATL3Q6DD88 541 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 TXNDC11Q6PKC3 985 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 FOXD4L3Q6VB84 417 aaPredicted RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 SPATA2LQ8IUW3 424 aaPredicted RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 MAB21L3Q8N8X9 362 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 STKLD1Q8NE28 680 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 MRPS31Q92665 395 aaKnown RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 TRMT2BQ96GJ1 504 aaKnown RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 FUBP3Q96I24 572 aaKnown RBP eCLIP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 SMG9Q9H0W8 520 aaKnown RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 EPC1Q9H2F5 836 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 KIF9Q9HAQ2 790 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 AGPAT3Q9NRZ7 376 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 FAM13BQ9NYF5 915 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 PCDHA7Q9UN72 937 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 MAGED2Q9UNF1 606 aaPredicted RBP17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 SPTBN2O15020 2390 aa17.77■□□□□ 0.44
CCDC28B-204ENST00000469003 ACACBO00763 2458 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 HCRTO43612 131 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 ME1P48163 572 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 TNK2Q07912 1038 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 GAS6Q14393 721 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 SNRNP35Q16560 246 aaKnown RBP17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 DDR2Q16832 855 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 CCDC142Q17RM4 750 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 ITPRIPL2Q3MIP1 535 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 DGKKQ5KSL6 1271 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 RESP18Q5W5W9 173 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 TXNDC8Q6A555 127 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 FAM171BQ6P995 826 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 MON1AQ86VX9 555 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 SPEM1Q8N4L4 309 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 DCLK2Q8N568 766 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 TTC8Q8TAM2 541 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 SCFD1Q8WVM8 642 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 KBTBD7Q8WVZ9 684 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 MYRFLQ96LU7 910 aa17.76■□□□□ 0.43
CCDC28B-204ENST00000469003 PVALEFA0A1B0GWK0 134 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CLIC2O15247 247 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CASP1P29466 404 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 MAGEA11P43364 429 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CXCL12P48061 93 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 SATB1Q01826 763 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CYP24A1Q07973 514 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 PSMD6Q15008 389 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 BMT2Q1RMZ1 405 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 WDR44Q5JSH3 913 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 C4orf50Q6ZRC1 276 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 HS2ST1Q7LGA3 356 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 TRAPPC11Q7Z392 1133 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 NELFCDQ8IXH7 590 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 XXYLT1Q8NBI6 393 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 RDH13Q8NBN7 331 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 USP13Q92995 863 aaPredicted RBP17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 FNBP1Q96RU3 617 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CGRRF1Q99675 332 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 FAM83CQ9BQN1 747 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 SYT15Q9BQS2 421 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 BLZF1Q9H2G9 400 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 GKN1Q9NS71 199 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 RBM12Q9NTZ6 932 aaKnown RBP17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 TDP1Q9NUW8 608 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 NCDNQ9UBB6 729 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CFAP45Q9UL16 551 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CDH9Q9ULB4 789 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 SMG5Q9UPR3 1016 aaKnown RBP17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 CCL26Q9Y258 94 aa17.75■□□□□ 0.43
CCDC28B-204ENST00000469003 TADA3O75528 432 aa17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 DLATP10515 647 aaKnown RBP17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 TNNI1P19237 187 aa17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 WARSP23381 471 aaKnown RBP17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 LMO2P25791 158 aa17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 CYP2J2P51589 502 aa17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 ZNF268Q14587 947 aaPredicted RBP17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 PON2Q15165 354 aa17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 C12orf56Q8IXR9 622 aa17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 CGNQ9P2M7 1197 aaKnown RBP17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 MAGEC2Q9UBF1 373 aaPredicted RBP17.74■□□□□ 0.43
CCDC28B-204ENST00000469003 GREB1Q4ZG55 1949 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 ATP2C2O75185 946 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 PAPSS2O95340 614 aaPredicted RBP17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 AFMP43652 599 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 PSMC1P62191 440 aaKnown RBP17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 CUL4BQ13620 913 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 RUNX3Q13761 415 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 PKP1Q13835 747 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 CCINQ13939 588 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 MAPRE1Q15691 268 aaKnown RBP17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 Q6ZS52 159 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 SCN4BQ8IWT1 228 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 SYNPOQ8N3V7 929 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 SECISBP2LQ93073 1101 aaKnown RBP17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 MYLPFQ96A32 169 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 MMS19Q96T76 1030 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms