RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 MKNK1Q9BUB5 465 aa18.76■□□□□ 0.59
COL7A1-206ENST00000466591 IL21Q9HBE4 155 aa18.76■□□□□ 0.59
COL7A1-206ENST00000466591 SLC39A2Q9NP94 309 aa18.76■□□□□ 0.59
COL7A1-206ENST00000466591 GKN1Q9NS71 199 aa18.76■□□□□ 0.59
COL7A1-206ENST00000466591 TDP1Q9NUW8 608 aa18.76■□□□□ 0.59
COL7A1-206ENST00000466591 SIX4Q9UIU6 781 aa18.76■□□□□ 0.59
COL7A1-206ENST00000466591 CDH9Q9ULB4 789 aa18.76■□□□□ 0.59
COL7A1-206ENST00000466591 PTPRZ1P23471 2315 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-206ENST00000466591 MYO15AQ9UKN7 3530 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 MYBPHLA2RUH7 354 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 ARNTLO00327 626 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 PDGFRBP09619 1106 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 CHRNB1P11230 501 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 WEE1P30291 646 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 FOXK2Q01167 660 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 GRSF1Q12849 480 aaKnown RBP eCLIP18.75■□□□□ 0.59
COL7A1-206ENST00000466591 BIRC3Q13489 604 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 KCNB1Q14721 858 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 SOWAHAQ2M3V2 549 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 TRAPPC11Q7Z392 1133 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 OSTM1Q86WC4 334 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 DCLK2Q8N568 766 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 GPR161Q8N6U8 529 aaKnown RBP18.75■□□□□ 0.59
COL7A1-206ENST00000466591 OR6B3Q8NGW1 331 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 GOLGA5Q8TBA6 731 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 MYLPFQ96A32 169 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 CGRRF1Q99675 332 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 RBM12Q9NTZ6 932 aaKnown RBP18.75■□□□□ 0.59
COL7A1-206ENST00000466591 EXOC1Q9NV70 894 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 EHD2Q9NZN4 543 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 CGNQ9P2M7 1197 aaKnown RBP18.75■□□□□ 0.59
COL7A1-206ENST00000466591 USP18Q9UMW8 372 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 PCDHA7Q9UN72 937 aa18.75■□□□□ 0.59
COL7A1-206ENST00000466591 NUP210Q8TEM1 1887 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-206ENST00000466591 USP17L7P0C7H9 530 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 CASP1P29466 404 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 PDE6CP51160 858 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 SATB1Q01826 763 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 FZD5Q13467 585 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 CFAP221Q4G0U5 840 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 HEATR6Q6AI08 1181 aaKnown RBP18.74■□□□□ 0.59
COL7A1-206ENST00000466591 MON1AQ86VX9 555 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 SPEM1Q8N4L4 309 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 ZBTB44Q8NCP5 570 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 CCDC47Q96A33 483 aaKnown RBP18.74■□□□□ 0.59
COL7A1-206ENST00000466591 EBF3Q9H4W6 596 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 PTPRJQ12913 1337 aa18.74■□□□□ 0.59
COL7A1-206ENST00000466591 PVALEFA0A1B0GWK0 134 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 HCRTO43612 131 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 NOL4O94818 638 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 ABL1P00519 1130 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 F11P03951 625 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 HMGA1P17096 107 aaKnown RBP18.73■□□□□ 0.59
COL7A1-206ENST00000466591 GNL1P36915 607 aaPredicted RBP18.73■□□□□ 0.59
COL7A1-206ENST00000466591 IFNAR2P48551 515 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 DNM1Q05193 864 aaKnown RBP18.73■□□□□ 0.59
COL7A1-206ENST00000466591 CYP24A1Q07973 514 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 CUL4BQ13620 913 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 RUNX3Q13761 415 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 PSMD6Q15008 389 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 LPAL2Q16609 132 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 WDR72Q3MJ13 1102 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 RESP18Q5W5W9 173 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 CNNM4Q6P4Q7 775 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 CPA6Q8N4T0 437 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 SUMF1Q8NBK3 374 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 SCFD1Q8WVM8 642 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 USP13Q92995 863 aaPredicted RBP18.73■□□□□ 0.59
COL7A1-206ENST00000466591 TRMT2BQ96GJ1 504 aaKnown RBP18.73■□□□□ 0.59
COL7A1-206ENST00000466591 LRRC3BQ96PB8 259 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 EPC1Q9H2F5 836 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 NXF1Q9UBU9 619 aaKnown RBP18.73■□□□□ 0.59
COL7A1-206ENST00000466591 CCL26Q9Y258 94 aa18.73■□□□□ 0.59
COL7A1-206ENST00000466591 CACNA1IQ9P0X4 2223 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 SHISA7A6NL88 538 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 SOBPA7XYQ1 873 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 GABRDO14764 452 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 TRIM66O15016 1216 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 ATP2C2O75185 946 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 WARSP23381 471 aaKnown RBP18.72■□□□□ 0.59
COL7A1-206ENST00000466591 BDNFP23560 247 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 SIM2Q14190 667 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-206ENST00000466591 MTF1Q14872 753 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 PDGFRLQ15198 375 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 KNOP1Q1ED39 458 aaKnown RBP18.72■□□□□ 0.59
COL7A1-206ENST00000466591 MDH1BQ5I0G3 518 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 TRIM68Q6AZZ1 485 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 TXNDC11Q6PKC3 985 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 VSTM1Q6UX27 236 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 CEP68Q76N32 757 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 EPM2AIP1Q7L775 607 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-206ENST00000466591 ERMP1Q7Z2K6 904 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-206ENST00000466591 SYNPOQ8N3V7 929 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 SYAP1Q96A49 352 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-206ENST00000466591 DUS2Q9NX74 493 aaKnown RBP18.72■□□□□ 0.59
COL7A1-206ENST00000466591 TRPM5Q9NZQ8 1165 aa18.72■□□□□ 0.59
COL7A1-206ENST00000466591 FAM186AA6NE01 2351 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 A8MXQ7 604 aa18.71■□□□□ 0.59
COL7A1-206ENST00000466591 TGFB1I1O43294 461 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms