RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TAF5Q15542 800 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 LACTB2Q53H82 288 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-217ENST00000466159 RNASEH2BQ5TBB1 312 aaKnown RBP9.41□□□□□ -0.9
SYNE1-217ENST00000466159 DPH6Q7L8W6 267 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 XYLT1Q86Y38 959 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 PLCD3Q8N3E9 789 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 CXorf38Q8TB03 319 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 SLC35B2Q8TB61 432 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 ACTL9Q8TC94 416 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 NKD2Q969F2 451 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-217ENST00000466159 OPTNQ96CV9 577 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 CCDC77Q9BR77 488 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 KDM4CQ9H3R0 1056 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 SYNCQ9H7C4 482 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 EFCC1Q9HA90 598 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 ERAP1Q9NZ08 941 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 PCSK1NQ9UHG2 260 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 KCNH4Q9UQ05 1017 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 EXOC1LA0A1B0GW35 172 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 RASA4BC9J798 803 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 RASA4O43374 803 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 SNX3O60493 162 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 VTNP04004 478 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 OTUD4Q01804 1114 aaKnown RBP9.41□□□□□ -0.9
SYNE1-217ENST00000466159 GAD2Q05329 585 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 PTPN11Q06124 597 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-217ENST00000466159 ITIH4Q14624 930 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 MORF4L2Q15014 288 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 AMHR2Q16671 573 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 NUGGCQ68CJ6 796 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 POLNQ7Z5Q5 900 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 TAB3Q8N5C8 712 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-217ENST00000466159 MAML1Q92585 1016 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 CFAP57Q96MR6 1250 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 FOXP3Q9BZS1 431 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 SLC40A1Q9NP59 571 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 PRMT7Q9NVM4 692 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-217ENST00000466159 GGT7Q9UJ14 662 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 POC1B-GALNT4F8VUJ3 575 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 PIK3R2O00459 728 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 CILPO75339 1184 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 MICAL2O94851 1124 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ABHD2P08910 425 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 CYP2C8P10632 490 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 KDELR1P24390 212 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 PHKA2P46019 1235 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ARHGAP1Q07960 439 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 SLC10A6Q3KNW5 377 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ARMCX2Q7L311 632 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ZBED8Q8IZ13 594 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 UBA3Q8TBC4 463 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 CKAP2Q8WWK9 683 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 MRRFQ96E11 262 aaKnown RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 CDCA5Q96FF9 252 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 TMEM176AQ96HP8 235 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ADAM33Q9BZ11 813 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 NSRP1Q9H0G5 558 aaKnown RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 PDZD7Q9H5P4 517 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 PCDH9Q9HC56 1237 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 HAUS2Q9NVX0 235 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 AKT3Q9Y243 479 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 M0QYV0 167 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 RASSF9O75901 435 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 LGALS2P05162 132 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 KRT7P08729 469 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ARF4P18085 180 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 OSBPP22059 807 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 STX2P32856 288 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 PDIA2Q13087 525 aaKnown RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 PPIL2Q13356 520 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ZKSCAN8Q15776 578 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 HADHQ16836 314 aaKnown RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 CCDC142Q17RM4 750 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 FAM182AQ5T1J6 154 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 MAP1SQ66K74 1059 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ANKMY2Q8IV38 441 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 FNIP1Q8TF40 1166 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 PRCCQ92733 491 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 P3H4Q92791 437 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 HEXIM2Q96MH2 286 aaKnown RBP9.4□□□□□ -0.9
SYNE1-217ENST00000466159 NFKBIZQ9BYH8 718 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 MROH8Q9H579 483 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 VPS37BQ9H9H4 285 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ABCF3Q9NUQ8 709 aa9.4□□□□□ -0.9
SYNE1-217ENST00000466159 ALOX15BO15296 676 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 SPAG7O75391 227 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 OAS1P00973 400 aaKnown RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 ZNF286BP0CG31 522 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 GHRP10912 638 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 MIPP30301 263 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 GPD2P43304 727 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 NRLP54845 237 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 MYO1EQ12965 1108 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 MTM1Q13496 603 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 ZNF268Q14587 947 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-217ENST00000466159 RAB6CQ53S08 254 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 SH3PXD2AQ5TCZ1 1133 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 ANKRD22Q5VYY1 191 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 CEP128Q6ZU80 1094 aa9.39□□□□□ -0.91
SYNE1-217ENST00000466159 TRPM8Q7Z2W7 1104 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms