RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RSPH10B2B2RC85 870 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 EEF2KO00418 725 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 RSPH10BP0C881 870 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 SLC26A11Q86WA9 606 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 IFNEQ86WN2 208 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 SPATA31A6Q5VVP1 1343 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 FAM205AQ6ZU69 1335 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 DFFAO00273 331 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 CSPG5O95196 566 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 GRK2P25098 689 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 LBRQ14739 615 aaKnown RBP19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 CLEC4FQ8N1N0 589 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 TNIP2Q8NFZ5 429 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 C10orf88Q9H8K7 445 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 POLIQ9UNA4 740 aa19.77■□□□□ 0.75
CCDC88B-204ENST00000463837 TNPO2O14787 897 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 CYP2C8P10632 490 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 PRKCEQ02156 737 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 RASA2Q15283 850 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 KDELC2Q7Z4H8 507 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 SAR1AQ9NR31 198 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 SNUPNO95149 360 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 CASP4P49662 377 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 PDK2Q15119 407 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 CRELD2Q6UXH1 353 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 SIKE1Q9BRV8 207 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 AKAP3O75969 853 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 MAPTP10636 758 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 GARTP22102 1010 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 SCFD2Q8WU76 684 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 MMADHCQ9H3L0 296 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 METTL5Q9NRN9 209 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 NUDT2P50583 147 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 EN1Q05925 392 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 SLC34A1Q06495 639 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 VPS72Q15906 364 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 TTMPQ5BVD1 217 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 BTBD8Q5XKL5 378 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 NAPEPLDQ6IQ20 393 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 TMPRSS6Q8IU80 811 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 PLD3Q8IV08 490 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 TSEN2Q8NCE0 465 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 EFCAB1Q9HAE3 211 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 KCNH7Q9NS40 1196 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 KCNH4Q9UQ05 1017 aa19.76■□□□□ 0.75
CCDC88B-204ENST00000463837 DPYSL4O14531 572 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 LSM8O95777 96 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 NR3C2P08235 984 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 RGS7P49802 495 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 SMTNL2Q2TAL5 461 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 COBLL1Q53SF7 1204 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 EFHC1Q5JVL4 640 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 NAIF1Q69YI7 327 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 SCN4BQ8IWT1 228 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 ATXN2Q99700 1313 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 CLTCQ00610 1675 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 S100A5P33763 92 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 PREPLQ4J6C6 727 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 SLC44A4Q53GD3 710 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 TTC33Q6PID6 262 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 NT5DC3Q86UY8 548 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 LZICQ8WZA0 190 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 INPP5DQ92835 1189 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 SLCO1B7G3V0H7 640 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 SOX11P35716 441 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 TMED10P49755 219 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 LINC00523Q86TU6 105 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 BTBD10Q9BSF8 475 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 PCDH9Q9HC56 1237 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 KCNQ2O43526 872 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 MOCS2O96007 188 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 KRT8P05787 483 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 ZNF235Q14590 738 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 CLEC16AQ2KHT3 1053 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 PLA2G4FQ68DD2 849 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 PI4K2AQ9BTU6 479 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 RUBCNLQ9H714 662 aa19.75■□□□□ 0.75
CCDC88B-204ENST00000463837 HNRNPCL2B2RXH8 293 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 GRIN3BO60391 1043 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 ATP9AO75110 1047 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 TFRCP02786 760 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 ITGA4P13612 1032 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 SERPINB8P50452 374 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 TMEM119Q4V9L6 283 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 ZNF720Q7Z2F6 126 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 ATPAF2Q8N5M1 289 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 PPP2R3CQ969Q6 453 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 CNBD2Q96M20 576 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 RIOX1Q9H6W3 641 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 SKAP2O75563 359 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 DDX5P17844 614 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 NUP107P57740 925 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 ELF3P78545 371 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 PDAP1Q13442 181 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 IRGCQ6NXR0 463 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 SPOCD1Q6ZMY3 1216 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 BNC2Q6ZN30 1099 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 GPR141Q7Z602 305 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms