RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ARID3AQ99856 593 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 CBX8Q9HC52 389 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 PRKAG3Q9UGI9 489 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 TRIM66O15016 1216 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 VNN2O95498 520 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 FGF19O95750 216 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 RFX1P22670 979 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 PON1P27169 355 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 IQCB1Q15051 598 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 CYP4A22Q5TCH4 519 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 TTC9BQ8N6N2 239 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 TMEM176AQ96HP8 235 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 HEXIM2Q96MH2 286 aaKnown RBP21.05■□□□□ 0.96
COL9A3-204ENST00000463487 PHF7Q9BWX1 381 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-204ENST00000463487 WDR6Q9NNW5 1121 aaKnown RBP21.05■□□□□ 0.96
COL9A3-204ENST00000463487 UBE2TQ9NPD8 197 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-204ENST00000463487 ASAH2Q9NR71 780 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 EHD2Q9NZN4 543 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 NR2E1Q9Y466 385 aa21.05■□□□□ 0.96
COL9A3-204ENST00000463487 CLUHO75153 1309 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 REV3LO60673 3130 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 LRRC10BA6NIK2 292 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 LGALS16A8MUM7 142 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 ZNF197O14709 1029 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 SLC9A1P19634 815 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 CYP2F1P24903 491 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 GRIK1P39086 918 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 PABPC1LQ4VXU2 614 aaKnown RBP21.04■□□□□ 0.96
COL9A3-204ENST00000463487 ZNF394Q53GI3 561 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 PDZD4Q76G19 769 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-204ENST00000463487 RRAGAQ7L523 313 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 GRASPQ7Z6J2 395 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-204ENST00000463487 SCN4BQ8IWT1 228 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 SMARCD1Q96GM5 515 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 CRISPLD1Q9H336 500 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 HMGXB4Q9UGU5 601 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 NME7Q9Y5B8 376 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 PCDHB4Q9Y5E5 795 aa21.04■□□□□ 0.96
COL9A3-204ENST00000463487 SERPINC1P01008 464 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 CSH1P0DML2 217 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 CSH2P0DML3 217 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 IL9P15248 144 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 BDNFP23560 247 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 ORC1Q13415 861 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 PHLDB3Q6NSJ2 640 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 FAM35AQ86V20 835 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 LUZP1Q86V48 1076 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 ARHGEF19Q8IW93 802 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 PSMG2Q969U7 264 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 ACSF2Q96CM8 615 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-204ENST00000463487 CORO1BQ9BR76 489 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 ANP32EQ9BTT0 268 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 HSD3B7Q9H2F3 369 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 POMKQ9H5K3 350 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 KIAA1257Q9ULG3 409 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 DAAM1Q9Y4D1 1078 aa21.03■□□□□ 0.96
COL9A3-204ENST00000463487 PRUNE2Q8WUY3 3088 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 SOAT2O75908 522 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 RHOP08100 348 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 PAEPP09466 180 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 BMP1P13497 986 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 ATP1A3P13637 1013 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 FSHRP23945 695 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 CDR1P51861 262 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 SLC8A3P57103 927 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 UBXN1Q04323 297 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 TMEM270Q6UE05 265 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 OTOP3Q7RTS5 596 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 WHAMMQ8TF30 809 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 CYFIP2Q96F07 1278 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 PCMTD1Q96MG8 357 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-204ENST00000463487 GCNAQ96QF7 691 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 TWNKQ96RR1 684 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 B3GNT5Q9BYG0 378 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 DMAP1Q9NPF5 467 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-204ENST00000463487 AVENQ9NQS1 362 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-204ENST00000463487 FAM49BQ9NUQ9 324 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.02■□□□□ 0.966e-8■■■■■ 41.8
COL9A3-204ENST00000463487 UXTQ9UBK9 157 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-204ENST00000463487 USTQ9Y2C2 406 aa21.02■□□□□ 0.96
COL9A3-204ENST00000463487 FAM200BP0CF97 657 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 KRT5P13647 590 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 ATF6P18850 670 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 RAD23BP54727 409 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 ZNF445P59923 1031 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 DDR2Q16832 855 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 CCDC142Q17RM4 750 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 SGO2Q562F6 1265 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 DNAJB7Q7Z6W7 309 aaPredicted RBP21.01■□□□□ 0.95
COL9A3-204ENST00000463487 ADHFE1Q8IWW8 467 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 TDRD5Q8NAT2 981 aaKnown RBP21.01■□□□□ 0.95
COL9A3-204ENST00000463487 SLC4A11Q8NBS3 891 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 SLC2A14Q8TDB8 520 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 SPATA17Q96L03 361 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 C8orf48Q96LL4 319 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 HNRNPABQ99729 332 aaKnown RBP21.01■□□□□ 0.95
COL9A3-204ENST00000463487 LSM14BQ9BX40 385 aaKnown RBP21.01■□□□□ 0.95
COL9A3-204ENST00000463487 ZNF518BQ9C0D4 1074 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 PLCB1Q9NQ66 1216 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 KRT82Q9NSB4 513 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms