RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 PRSS33Q8NF86 280 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 TASP1Q9H6P5 420 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 BRD9Q9H8M2 597 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 CRTAC1Q9NQ79 661 aa24.56■■□□□ 1.52
PTPN4-208ENST00000460289 UXTQ9UBK9 157 aaPredicted RBP24.56■■□□□ 1.52
PTPN4-208ENST00000460289 A8MXQ7 604 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 CETN3O15182 167 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 GALR2O43603 387 aaPredicted RBP24.55■■□□□ 1.52
PTPN4-208ENST00000460289 PI15O43692 258 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 HMGA1P17096 107 aaKnown RBP24.55■■□□□ 1.52
PTPN4-208ENST00000460289 WEE1P30291 646 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 GPR15P49685 360 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 CYP27A1Q02318 531 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 MLF2Q15773 248 aaPredicted RBP24.55■■□□□ 1.52
PTPN4-208ENST00000460289 STXBP5Q5T5C0 1151 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 VITQ6UXI7 678 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 ARID3BQ8IVW6 561 aaPredicted RBP24.55■■□□□ 1.52
PTPN4-208ENST00000460289 SCN4BQ8IWT1 228 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 DNASE1L2Q92874 299 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 IRF7Q92985 503 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 MYLPFQ96A32 169 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 CEP295NLQ96MC4 621 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 TSG101Q99816 390 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 MKNK1Q9BUB5 465 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 CHMP5Q9NZZ3 219 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 MAGED2Q9UNF1 606 aaPredicted RBP24.55■■□□□ 1.52
PTPN4-208ENST00000460289 MUC6Q6W4X9 2439 aa24.55■■□□□ 1.52
PTPN4-208ENST00000460289 KMT2EQ8IZD2 1858 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 SOBPA7XYQ1 873 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 HEPACAM2A8MVW5 462 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 DPYSL4O14531 572 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 PTPN1P18031 435 aaKnown RBP24.54■■□□□ 1.52
PTPN4-208ENST00000460289 GRM2Q14416 872 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 CCDC142Q17RM4 750 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 C1orf220Q5T0J3 134 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 SDHAF4Q5VUM1 108 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 ERCC4Q92889 916 aaPredicted RBP24.54■■□□□ 1.52
PTPN4-208ENST00000460289 TRMT2BQ96GJ1 504 aaKnown RBP24.54■■□□□ 1.52
PTPN4-208ENST00000460289 PCED1BQ96HM7 432 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 MYRFLQ96LU7 910 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 SIT1Q9Y3P8 196 aa24.54■■□□□ 1.52
PTPN4-208ENST00000460289 SLC38A8A6NNN8 435 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 NOL4O94818 638 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 F11P03951 625 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 BDNFP23560 247 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 DDX6P26196 483 aaKnown RBP eCLIP24.53■■□□□ 1.52
PTPN4-208ENST00000460289 GRIK1P39086 918 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 NLRP12P59046 1061 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 MCCD1P59942 119 aaPredicted RBP24.53■■□□□ 1.52
PTPN4-208ENST00000460289 CYP4F8P98187 520 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 MDH1BQ5I0G3 518 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 YAF2Q8IY57 180 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 IMPG2Q9BZV3 1241 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 TRPV5Q9NQA5 729 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 OBP2AQ9NY56 170 aa24.53■■□□□ 1.52
PTPN4-208ENST00000460289 KANSL1LA0AUZ9 987 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 ZNF263O14978 683 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 EPB41P11171 864 aaKnown RBP24.52■■□□□ 1.52
PTPN4-208ENST00000460289 GDI1P31150 447 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 PIK3CAP42336 1068 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 CDH8P55286 799 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 NHLH1Q02575 133 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 TCF15Q12870 199 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 STIM1Q13586 685 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 ADSSL1Q8N142 457 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 MRPS31Q92665 395 aaKnown RBP24.52■■□□□ 1.52
PTPN4-208ENST00000460289 TNIP3Q96KP6 325 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 SPATA17Q96L03 361 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 DDX23Q9BUQ8 820 aaKnown RBP24.52■■□□□ 1.52
PTPN4-208ENST00000460289 SLC46A2Q9BY10 475 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 SMYD3Q9H7B4 428 aa24.52■■□□□ 1.52
PTPN4-208ENST00000460289 WDFY4Q6ZS81 3184 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 TRIM66O15016 1216 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 STX10O60499 249 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 GADD45BO75293 160 aaPredicted RBP24.51■■□□□ 1.51
PTPN4-208ENST00000460289 ASS1P00966 412 aaKnown RBP24.51■■□□□ 1.51
PTPN4-208ENST00000460289 HLA-DRAP01903 254 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 TRIM49P0CI25 452 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 TRIM49CP0CI26 452 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 ANXA13P27216 316 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 GTF2H1P32780 548 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 ANP32AP39687 249 aaKnown RBP24.51■■□□□ 1.51
PTPN4-208ENST00000460289 PPP1R2P41236 205 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 GCLMP48507 274 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 FKBP3Q00688 224 aaKnown RBP24.51■■□□□ 1.51
PTPN4-208ENST00000460289 TMEM150AQ86TG1 271 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 B3GALNT2Q8NCR0 500 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 NELL2Q99435 816 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 DPEP3Q9H4B8 488 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 EHD2Q9NZN4 543 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 NME7Q9Y5B8 376 aa24.51■■□□□ 1.51
PTPN4-208ENST00000460289 AVPR1AP37288 418 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 LRRC63Q05C16 580 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 PPP3CAQ08209 521 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 FCHO2Q0JRZ9 810 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 KRT39Q6A163 491 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 GPIHBP1Q8IV16 184 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 CCDC105Q8IYK2 499 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 CMTM8Q8IZV2 173 aa24.5■■□□□ 1.51
PTPN4-208ENST00000460289 CCDC150Q8NCX0 1101 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms