RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 PFDN1O60925 122 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 RARAP10276 462 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 RPL21P46778 160 aaKnown RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 PHEXP78562 749 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 PDK2Q15119 407 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 CD302Q8IX05 232 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 EIF1ADQ8N9N8 165 aaKnown RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 ZNF606Q8WXB4 792 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 MTBPQ96DY7 904 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 PARK7Q99497 189 aaKnown RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 VPS33BQ9H267 617 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 RNF103-CHMP3A0A140T963 221 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 VWA5AO00534 786 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 TRAPPC3O43617 180 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 PSMD10O75832 226 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 CHI3L2Q15782 390 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 NOP9Q86U38 636 aaKnown RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 NRBF2Q96F24 287 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 NSL1Q96IY1 281 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 VCPIP1Q96JH7 1222 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 CNPY3Q9BT09 278 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 THTPAQ9BU02 230 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 TASP1Q9H6P5 420 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 C20orf96Q9NUD7 363 aaPredicted RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 SLC8A2Q9UPR5 921 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 NFKBIAP25963 317 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 SCTRP47872 440 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 SLC26A2P50443 739 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 RARS2Q5T160 578 aaKnown RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 TMEM139Q8IV31 216 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 MAP4K3Q8IVH8 894 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 ARID3BQ8IVW6 561 aaPredicted RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 CERS5Q8N5B7 392 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 DNERQ8NFT8 737 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 ACTL9Q8TC94 416 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 TFB1MQ8WVM0 346 aaKnown RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 DCLK3Q9C098 648 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 GANQ9H2C0 597 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 NEMP1O14524 444 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 STAG3L1P0CL83 205 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 ANO4Q32M45 955 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 TMCO4Q5TGY1 634 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 METTL7BQ6UX53 244 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 IRF2BP1Q8IU81 584 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 ZNF669Q96BR6 464 aaPredicted RBP15.39■□□□□ 0.05
PTPRU-205ENST00000460170 ULK4Q96C45 1275 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 RMDN1Q96DB5 314 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 TJP2Q9UDY2 1190 aa15.39■□□□□ 0.05
PTPRU-205ENST00000460170 RPS6KA5O75582 802 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 DSG3P32926 999 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 ACOT1Q86TX2 421 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 LBHD1Q9BQE6 289 aaPredicted RBP15.38■□□□□ 0.05
PTPRU-205ENST00000460170 NOD2Q9HC29 1040 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 PTPN11Q06124 597 aaPredicted RBP15.38■□□□□ 0.05
PTPRU-205ENST00000460170 FOXR2Q6PJQ5 311 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 EMC1Q8N766 993 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 PPP1R36Q96LQ0 422 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 KRT82Q9NSB4 513 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 ZBTB24O43167 697 aaPredicted RBP15.38■□□□□ 0.05
PTPRU-205ENST00000460170 PGK2P07205 417 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 FAM200BP0CF97 657 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 PTGER2P43116 358 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 OVGP1Q12889 678 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 TAF1CQ15572 869 aaPredicted RBP15.38■□□□□ 0.05
PTPRU-205ENST00000460170 DDIASQ8IXT1 998 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 MRPL46Q9H2W6 279 aaKnown RBP15.38■□□□□ 0.05
PTPRU-205ENST00000460170 AVENQ9NQS1 362 aaPredicted RBP15.38■□□□□ 0.05
PTPRU-205ENST00000460170 BATF3Q9NR55 127 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 ABCF3Q9NUQ8 709 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 NSMCE4AQ9NXX6 385 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 SLC24A2Q9UI40 661 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 MAP3K6O95382 1288 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 MYCP01106 439 aaPredicted RBP15.38■□□□□ 0.05
PTPRU-205ENST00000460170 FDFT1P37268 417 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 GLRA4Q5JXX5 417 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 FKBP1CQ5VVH2 108 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 KCNK16Q96T55 309 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 CYP3A43Q9HB55 503 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 USP18Q9UMW8 372 aa15.38■□□□□ 0.05
PTPRU-205ENST00000460170 ASTN1O14525 1302 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 WNT10BO00744 389 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 MYL2P10916 166 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 PPP3CAQ08209 521 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 TRADDQ15628 312 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 CMTM5Q96DZ9 223 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 LRRC4BQ9NT99 713 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 CCL15-CCL14A0A0B4J2E2 113 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 PIK3CDO00329 1044 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 LAMTOR4Q0VGL1 99 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 R3HDM1Q15032 1099 aaKnown RBP15.37■□□□□ 0.05
PTPRU-205ENST00000460170 CCL15Q16663 113 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 NLRP9Q7RTR0 991 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 NCLNQ969V3 563 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 ARHGEF38Q9NXL2 777 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 NAALADL1Q9UQQ1 740 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 RNF225M0QZC1 329 aaPredicted RBP15.37■□□□□ 0.05
PTPRU-205ENST00000460170 TGFB3P10600 412 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 NCAM1P13591 858 aa15.37■□□□□ 0.05
PTPRU-205ENST00000460170 RECQLP46063 649 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms