RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 GOLGA8TH3BQL2 631 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 FOXN3O00409 490 aaPredicted RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PDGFRBP09619 1106 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 GRIK1P39086 918 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 FBXW4P57775 412 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CSTF3Q12996 717 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TTI2Q6NXR4 508 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CCDC81Q6ZN84 652 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TTC30BQ8N4P2 665 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 DAGLBQ8NCG7 672 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 ATG4AQ8WYN0 398 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 JADE3Q92613 823 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 LPAR1Q92633 364 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TUBGCP3Q96CW5 907 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 FOPNLQ96NB1 174 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PI4K2AQ9BTU6 479 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 METTL5Q9NRN9 209 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 FAM49BQ9NUQ9 324 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 DCDC2Q9UHG0 476 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 ITM2BQ9Y287 266 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 V9GYQ6 96 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 NCOA3Q9Y6Q9 1424 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 BCORL1Q5H9F3 1711 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 KANSL1LA0AUZ9 987 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 DPYSL4O14531 572 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TRAPPC3O43617 180 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 LZTS3O60299 673 aaPredicted RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 RASSF9O75901 435 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CLPTM1O96005 669 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CSF1RP07333 972 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PTPN7P35236 360 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 HERVK_113P62684 666 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PCSK7Q16549 785 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PLA2G4FQ68DD2 849 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 BNC2Q6ZN30 1099 aaPredicted RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 LINC00523Q86TU6 105 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 APOBEC3FQ8IUX4 373 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 FBXO36Q8NEA4 188 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 SGF29Q96ES7 293 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 ABHD8Q96I13 439 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 NAT9Q9BTE0 207 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CATSPERBQ9H7T0 1116 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 RXFP1Q9HBX9 757 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 ANKEF1Q9NU02 776 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 GIMAP4Q9NUV9 329 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 H2AFY2Q9P0M6 372 aaPredicted RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 RPS6KL1Q9Y6S9 549 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 ADGRA2Q96PE1 1338 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PXDNLA1KZ92 1463 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TNPO2O14787 897 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CD4P01730 458 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 RARBP10826 455 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 GZMAP12544 262 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CYP11B2P19099 503 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PRKCEQ02156 737 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TROAPQ12815 778 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 COG2Q14746 738 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 EZH2Q15910 746 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TRMT5Q32P41 509 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CLEC10AQ8IUN9 316 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 C1orf131Q8NDD1 294 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 MXRA8Q9BRK3 442 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 SMARCAD1Q9H4L7 1026 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 ANKZF1Q9H8Y5 726 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 JMJD4Q9H9V9 463 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 SLC24A2Q9UI40 661 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 MAGEB2O15479 319 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 H2AFYO75367 372 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CYP2C8P10632 490 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TGM2P21980 687 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CCDC142Q17RM4 750 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 DCAF6Q58WW2 860 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 AARS2Q5JTZ9 985 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CDKAL1Q5VV42 579 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PTRHD1Q6GMV3 140 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CCDC103Q8IW40 242 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 AGBL1Q96MI9 1066 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PAPOLBQ9NRJ5 636 aaKnown RBP8.08□□□□□ -1.12
NEDD9-204ENST00000448183 IMPAD1Q9NX62 359 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 SYBUQ9NX95 663 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 PIM2Q9P1W9 311 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 TAGLN3Q9UI15 199 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 RAB21Q9UL25 225 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 SNX13Q9Y5W8 968 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 CRB1P82279 1406 aa8.08□□□□□ -1.12
NEDD9-204ENST00000448183 A0A0A6YYK5 440 aaPredicted RBP8.07□□□□□ -1.12
NEDD9-204ENST00000448183 MAFGO15525 162 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 SOAT2O75908 522 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 ARIH2O95376 493 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 ATP6V1G2O95670 118 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 GYS1P13807 737 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF23P17027 643 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 AKT1P31749 480 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 KRR1Q13601 381 aaKnown RBP8.07□□□□□ -1.12
NEDD9-204ENST00000448183 SF3B3Q15393 1217 aaKnown RBP8.07□□□□□ -1.12
NEDD9-204ENST00000448183 SYTL3Q4VX76 610 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 FAXCQ5TGI0 409 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 AGAP9Q5VTM2 703 aa8.07□□□□□ -1.12
NEDD9-204ENST00000448183 MTDHQ86UE4 582 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms