RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 AGBL3Q8NEM8 1001 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 SRPK1Q96SB4 655 aaKnown RBP17.87■□□□□ 0.45
PTPRF-209ENST00000438120 MAP3K14Q99558 947 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 PACSIN1Q9BY11 444 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 CDC42BPAQ5VT25 1732 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 P4HA2O15460 535 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 CENPCQ03188 943 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 BTN2A2Q8WVV5 523 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 KCNB2Q92953 911 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 ELMO3Q96BJ8 720 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 STAMBPL1Q96FJ0 436 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 TRIM49D1C9J1S8 452 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 RPS12P25398 132 aaKnown RBP17.87■□□□□ 0.45
PTPRF-209ENST00000438120 SGSM3Q96HU1 749 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 A0A087X0T9 212 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 FAM228BP0C875 321 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 SLC15A2Q16348 729 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 NAPEPLDQ6IQ20 393 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 E2F7Q96AV8 911 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 WASHC5Q12768 1159 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 GTF3C2Q8WUA4 911 aaPredicted RBP17.87■□□□□ 0.45
PTPRF-209ENST00000438120 GRID1Q9ULK0 1009 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 CNTNAP4Q9C0A0 1308 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 FCGRTP55899 365 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 ISCUQ9H1K1 167 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 MAN1A2O60476 641 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 NPTX2P47972 431 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 SERPINB4P48594 390 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 SNRPFP62306 86 aaKnown RBP17.86■□□□□ 0.45
PTPRF-209ENST00000438120 TXNRD3Q86VQ6 643 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 TECPR2O15040 1411 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 PNPLA4P41247 253 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 ERVK-24P63145 666 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 ICE2Q659A1 982 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 DEFB132Q7Z7B7 95 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 SLC13A5Q86YT5 568 aaPredicted RBP17.86■□□□□ 0.45
PTPRF-209ENST00000438120 HEATR9A2RTY3 570 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 POU4F1Q01851 419 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 SLC30A10Q6XR72 485 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 SPIRE2Q8WWL2 714 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 IQSEC2Q5JU85 1478 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 STX7O15400 261 aaKnown RBP17.86■□□□□ 0.45
PTPRF-209ENST00000438120 DDX5P17844 614 aaKnown RBP17.86■□□□□ 0.45
PTPRF-209ENST00000438120 TGM2P21980 687 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 GEMIN4P57678 1058 aaKnown RBP17.86■□□□□ 0.45
PTPRF-209ENST00000438120 LAMB3Q13751 1172 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 XRRA1Q6P2D8 792 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 PKD2L2Q9NZM6 624 aa17.86■□□□□ 0.45
PTPRF-209ENST00000438120 ADCY3O60266 1144 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 DNAJC3Q13217 504 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 DDX39BQ13838 428 aaKnown RBP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 BTNL9Q6UXG8 535 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ERGIC2Q96RQ1 377 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 SPATA31A6Q5VVP1 1343 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 CFAP99D6REC4 459 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 CYB561D2O14569 222 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 OGTO15294 1046 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 CLASP2O75122 1294 aaKnown RBP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ZC3H11AO75152 810 aaKnown RBP eCLIP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 SKAP2O75563 359 aaPredicted RBP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 LSP1P33241 339 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ZNF177Q13360 481 aaPredicted RBP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 PTK6Q13882 451 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 C16orf89Q6UX73 402 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 FAM111AQ96PZ2 611 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 NFIBO00712 420 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 PPP4CP60510 307 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 FUT11Q495W5 492 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ATP6V0D2Q8N8Y2 350 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 APOL2Q9BQE5 337 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ZSWIM1Q9BR11 485 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 CD163L1Q9NR16 1453 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ATN1P54259 1190 aaPredicted RBP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 DNAL1Q4LDG9 190 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 VIPAS39Q9H9C1 493 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 PMS1P54277 932 aaKnown RBP17.85■□□□□ 0.45
PTPRF-209ENST00000438120 MAP3K7CLP57077 242 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 KCNK10P57789 538 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 AGBL2Q5U5Z8 902 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 ADGRA1Q86SQ6 560 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 NSMCE4AQ9NXX6 385 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 SPASTQ9UBP0 616 aa17.85■□□□□ 0.45
PTPRF-209ENST00000438120 DDTLA6NHG4 134 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-209ENST00000438120 ZNF286BP0CG31 522 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 STAG3L1P0CL83 205 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 GTF2A2P52657 109 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 SREBF2Q12772 1141 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 SDE2Q6IQ49 451 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 TRPM8Q7Z2W7 1104 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 COL23A1Q86Y22 540 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-209ENST00000438120 DAGLBQ8NCG7 672 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 CASKIN2Q8WXE0 1202 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 RPS6KL1Q9Y6S9 549 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 MADDQ8WXG6 1647 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 CLEC16AQ2KHT3 1053 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 PCYOX1LQ8NBM8 494 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 ENGASEQ8NFI3 743 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 NMRK2Q9NPI5 230 aa17.84■□□□□ 0.45
PTPRF-209ENST00000438120 SUPT20HL2P0C7V6 817 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms