RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CDC25BP30305 580 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 ACOT2P49753 483 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 YARSP54577 528 aaKnown RBP13.03□□□□□ -0.32
PTPRF-208ENST00000437607 ARPP19P56211 112 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 MYL7Q01449 175 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 ENPEPQ07075 957 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 RSPO4Q2I0M5 234 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-208ENST00000437607 VWA3BQ502W6 1294 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 ZNF852Q6ZMS4 543 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-208ENST00000437607 HS6ST3Q8IZP7 471 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 ZSWIM2Q8NEG5 633 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 TMC2Q8TDI7 906 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 NELL2Q99435 816 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 HAPLN2Q9GZV7 340 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 EPC1Q9H2F5 836 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 NDST4Q9H3R1 872 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 RPF1Q9H9Y2 349 aaKnown RBP13.03□□□□□ -0.32
PTPRF-208ENST00000437607 CYP4F11Q9HBI6 524 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 TOPORSQ9NS56 1045 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-208ENST00000437607 SLC38A7Q9NVC3 462 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 ZSCAN32Q9NX65 697 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 CNTN3Q9P232 1028 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 INSL5Q9Y5Q6 135 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 PRRG1O14668 218 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 AP5Z1O43299 807 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 FAM189A1O60320 539 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 MICAL2O94851 1124 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 IL18RAPO95256 599 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 VNN2O95498 520 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 CLTAP09496 248 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 DLATP10515 647 aaKnown RBP13.02□□□□□ -0.33
PTPRF-208ENST00000437607 ELF1P32519 619 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 MXI1P50539 228 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 UBXN1Q04323 297 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 CCDC173Q0VFZ6 552 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 MTAPQ13126 283 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 PSMD6Q15008 389 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 SURF1Q15526 300 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 SLC10A6Q3KNW5 377 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 SEZ6Q53EL9 994 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 MIIPQ5JXC2 388 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 VITQ6UXI7 678 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 APTXQ7Z2E3 356 aaKnown RBP13.02□□□□□ -0.33
PTPRF-208ENST00000437607 DRC7Q8IY82 874 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 DNASE1L2Q92874 299 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 SLC35C1Q96A29 364 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 CCDC127Q96BQ5 260 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 BORCS6Q96GS4 357 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 SUSD3Q96L08 255 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 ASB16Q96NS5 453 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 ACAP3Q96P50 834 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 CGRRF1Q99675 332 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 MMRN2Q9H8L6 949 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 RTN4Q9NQC3 1192 aaKnown RBP13.02□□□□□ -0.33
PTPRF-208ENST00000437607 CEP72Q9P209 647 aa13.02□□□□□ -0.33
PTPRF-208ENST00000437607 CPSF3Q9UKF6 684 aaKnown RBP13.02□□□□□ -0.33
PTPRF-208ENST00000437607 ANAPC1Q9H1A4 1944 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 ACACBO00763 2458 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 H7C4K7 107 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 CXCL8P10145 99 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 GJA1P17302 382 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 TGM1P22735 817 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 RPL9P32969 192 aaKnown RBP13.01□□□□□ -0.33
PTPRF-208ENST00000437607 TNFSF9P41273 254 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 ADCY1Q08828 1119 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 CETN1Q12798 172 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 KCNH2Q12809 1159 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 TPGS2Q68CL5 300 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 ATRIPQ8WXE1 791 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 FAM212AQ96EL1 285 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 PCMTD1Q96MG8 357 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-208ENST00000437607 NAP1L5Q96NT1 182 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-208ENST00000437607 ZFP14Q9HCL3 533 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 ZNF334Q9HCZ1 680 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-208ENST00000437607 INTS13Q9NVM9 706 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 NCDNQ9UBB6 729 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 TUBGCP4Q9UGJ1 667 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 NDRG2Q9UN36 371 aaKnown RBP13.01□□□□□ -0.33
PTPRF-208ENST00000437607 SMG5Q9UPR3 1016 aaKnown RBP13.01□□□□□ -0.33
PTPRF-208ENST00000437607 SDK1Q7Z5N4 2213 aa13.01□□□□□ -0.33
PTPRF-208ENST00000437607 MAP1BP46821 2468 aaKnown RBP13.01□□□□□ -0.33
PTPRF-208ENST00000437607 CHD8Q9HCK8 2581 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 LRRC10BA6NIK2 292 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 LRRIQ3A6PVS8 624 aaPredicted RBP13□□□□□ -0.33
PTPRF-208ENST00000437607 ARNTLO00327 626 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 ZNF197O14709 1029 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 NCAM2O15394 837 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 CLSTN1O94985 981 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 TMEM191BP0C7N4 346 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 TNNI1P19237 187 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 VIPR2P41587 438 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 FMO5P49326 533 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 EPHA5P54756 1037 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 POU5F1Q01860 360 aaKnown RBP13□□□□□ -0.33
PTPRF-208ENST00000437607 TWF1Q12792 350 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 TRIM14Q14142 442 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 ENOX2Q16206 610 aaKnown RBP13□□□□□ -0.33
PTPRF-208ENST00000437607 CTXN3Q4LDR2 81 aa13□□□□□ -0.33
PTPRF-208ENST00000437607 CRELD2Q6UXH1 353 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms