RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 HYIQ5T013 277 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 CYP4F22Q6NT55 531 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ZNF449Q6P9G9 518 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 TLK2Q86UE8 772 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ASAP3Q8TDY4 903 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 SRPK1Q96SB4 655 aaKnown RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 CLIC5Q9NZA1 410 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 PTTG2Q9NZH5 202 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 RBPJLQ9UBG7 517 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 C5orf60A6NFR6 353 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 CASQ2O14958 399 aaPredicted RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 SLC16A4O15374 487 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ENO2P09104 434 aaPredicted RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 CACNB1Q02641 598 aaPredicted RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 RINT1Q6NUQ1 792 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 BPHLQ86WA6 291 aaPredicted RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 SPATA4Q8NEY3 305 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ETNPPLQ8TBG4 499 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 GIPC2Q8TF65 315 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 OLFML3Q9NRN5 406 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 MED24O75448 989 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 PRKCBP05771 671 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 CYP2C9P11712 490 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 TNFAIP3P21580 790 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 UBA1P22314 1058 aaKnown RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 STAT1P42224 750 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ARFIP2P53365 341 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 DR1Q01658 176 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 DSG1Q02413 1049 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 BFSP2Q13515 415 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 LIN9Q5TKA1 542 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 OR52E8Q6IFG1 317 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 TMEM139Q8IV31 216 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ADSSL1Q8N142 457 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 PGBD4Q96DM1 585 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 MAELQ96JY0 434 aaKnown RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 CGREF1Q99674 301 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 PRMT1Q99873 361 aaKnown RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 HAUS8Q9BT25 410 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 Q9H521 79 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 C10orf88Q9H8K7 445 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 TSKSQ9UJT2 592 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 FAM32AQ9Y421 112 aaKnown RBP10.26□□□□□ -0.77
USP54-205ENST00000424265 FRMPD4Q14CM0 1322 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 RPTORQ8N122 1335 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 FBP2O00757 339 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 RTP1P59025 263 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 LMNB2Q03252 620 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 LRRC41Q15345 812 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 DUSP28Q4G0W2 176 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 GPD1LQ8N335 351 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 CCDC138Q96M89 665 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 KRT12Q99456 494 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 KRT82Q9NSB4 513 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ESYT3A0FGR9 886 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 CAPN1P07384 714 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 HMOX2P30519 316 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 PRCPP42785 496 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 ITGA9Q13797 1035 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 DCAF4L1Q3SXM0 396 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 ZNF568Q3ZCX4 644 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 C1orf131Q8NDD1 294 aaKnown RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 DNAJC1Q96KC8 554 aaKnown RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 Q9Y3F1 56 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 LAMA4Q16363 1823 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 SNTNA6NMZ2 147 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 H3BRB1 525 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 KRT19P08727 400 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 KRT5P13647 590 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 PIK3CAP42336 1068 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 CDK7P50613 346 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 MED21Q13503 144 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 C16orf72Q14CZ0 275 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 TCP11X2Q5H9J9 407 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 COX4I2Q96KJ9 171 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 LSM14BQ9BX40 385 aaKnown RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 TUT1Q9H6E5 874 aaKnown RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 FKBP14Q9NWM8 211 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 HESX1Q9UBX0 185 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 TUBGCP6Q96RT7 1819 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 MAGEB3O15480 346 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 EIF3BP55884 814 aaKnown RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 PLOD1Q02809 727 aaPredicted RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 ZNF410Q86VK4 478 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 SPERTQ8NA61 448 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 RNF149Q8NC42 400 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 NKX2-3Q8TAU0 364 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 AFG1LQ8WV93 481 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 OSCP1Q8WVF1 389 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 EDEM3Q9BZQ6 932 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 ZC4H2Q9NQZ6 224 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 FAIMQ9NVQ4 179 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 TELO2Q9Y4R8 837 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 LAMB1P07942 1786 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 SNX2O60749 519 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 ESRRAP11474 423 aaPredicted RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 NCAPHQ15003 741 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 EARS2Q5JPH6 523 aaKnown RBP10.25□□□□□ -0.77
USP54-205ENST00000424265 DENND2CQ68D51 928 aa10.25□□□□□ -0.77
USP54-205ENST00000424265 LRRC74BQ6ZQY2 392 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms