RNA–Protein interactions for RNA: ENST00000423214.1

COL18A1-205, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 5

Gene COL18A1, Length 839 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-205ENST00000423214 LHX1P48742 406 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 ATXN1P54253 815 aaKnown RBP17.33■□□□□ 0.36
COL18A1-205ENST00000423214 RBP5P82980 135 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 AMPD2Q01433 879 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 MYO1EQ12965 1108 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 DDR2Q16832 855 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 LMBRD2Q68DH5 695 aaPredicted RBP17.33■□□□□ 0.36
COL18A1-205ENST00000423214 TRIM68Q6AZZ1 485 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 WDR5BQ86VZ2 330 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 TOP6BLQ8N6T0 577 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 EXOC4Q96A65 974 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 TRMT2BQ96GJ1 504 aaKnown RBP17.33■□□□□ 0.36
COL18A1-205ENST00000423214 FAM84AQ96KN4 292 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 USP28Q96RU2 1077 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 FGFBP2Q9BYJ0 223 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 PANK2Q9BZ23 570 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 HPS4Q9NQG7 708 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 GDAP2Q9NXN4 497 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.33■□□□□ 0.36
COL18A1-205ENST00000423214 NUP205Q92621 2012 aa17.33■□□□□ 0.36
COL18A1-205ENST00000423214 A0A087X0B3 334 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 K7ELQ4 463 aaPredicted RBP17.32■□□□□ 0.36
COL18A1-205ENST00000423214 HRO43593 1189 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 NOL4O94818 638 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 PRPF6O94906 941 aaKnown RBP17.32■□□□□ 0.36
COL18A1-205ENST00000423214 CKMP06732 381 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 TGM1P22735 817 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 SLC39A14Q15043 492 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 STK38Q15208 465 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 MON1AQ86VX9 555 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 SCN4BQ8IWT1 228 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 CPA6Q8N4T0 437 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 FSIP1Q8NA03 581 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 NETO1Q8TDF5 533 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 FAM83CQ9BQN1 747 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 ZSCAN16Q9H4T2 348 aaPredicted RBP17.32■□□□□ 0.36
COL18A1-205ENST00000423214 SEMA4GQ9NTN9 838 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 C2orf42Q9NWW7 574 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 GTF3C4Q9UKN8 822 aa17.32■□□□□ 0.36
COL18A1-205ENST00000423214 MORC2Q9Y6X9 1032 aaPredicted RBP17.32■□□□□ 0.36
COL18A1-205ENST00000423214 TRAV19A0A0A6YYK7 116 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 ATG13O75143 517 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 TADA3O75528 432 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 USP17L7P0C7H9 530 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 ARSAP15289 507 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 HOXA6P31267 233 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 FAM160A1Q05DH4 1040 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 ZNF268Q14587 947 aaPredicted RBP17.31■□□□□ 0.36
COL18A1-205ENST00000423214 MTF1Q14872 753 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 PDGFRLQ15198 375 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 CFAP221Q4G0U5 840 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 TMEM196Q5HYL7 178 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 C4orf50Q6ZRC1 276 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 PRR23CQ6ZRP0 262 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 OSTM1Q86WC4 334 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 INTS4Q96HW7 963 aaKnown RBP17.31■□□□□ 0.36
COL18A1-205ENST00000423214 FUBP3Q96I24 572 aaKnown RBP eCLIP17.31■□□□□ 0.36
COL18A1-205ENST00000423214 LRRC27Q9C0I9 530 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 TNMDQ9H2S6 317 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 SIX4Q9UIU6 781 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 SLC8A2Q9UPR5 921 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 MTMR6Q9Y217 621 aa17.31■□□□□ 0.36
COL18A1-205ENST00000423214 MYOFQ9NZM1 2061 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 TPRP12270 2363 aaKnown RBP17.3■□□□□ 0.36
COL18A1-205ENST00000423214 THADAQ6YHU6 1953 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.3■□□□□ 0.36
COL18A1-205ENST00000423214 DCDC2BA2VCK2 349 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 ZNF233A6NK53 670 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 FOXD2O60548 495 aaPredicted RBP17.3■□□□□ 0.36
COL18A1-205ENST00000423214 RNF40O75150 1001 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 CCDC192P0DO97 292 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 IFNAR2P48551 515 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 USP4Q13107 963 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 KCNB1Q14721 858 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 SURF1Q15526 300 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 CSRP2Q16527 193 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 CCDC142Q17RM4 750 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 FSTL4Q6MZW2 842 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 PKN3Q6P5Z2 889 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 FAM160A2Q8N612 972 aaPredicted RBP17.3■□□□□ 0.36
COL18A1-205ENST00000423214 CXorf38Q8TB03 319 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 ATP2A3Q93084 1043 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 HPDLQ96IR7 371 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 PKMYT1Q99640 499 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 SYT15Q9BQS2 421 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 INTS13Q9NVM9 706 aa17.3■□□□□ 0.36
COL18A1-205ENST00000423214 PTPRJQ12913 1337 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 TRDMT1O14717 391 aaKnown RBP17.29■□□□□ 0.36
COL18A1-205ENST00000423214 HCRTO43612 131 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 STX6O43752 255 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 DRD1P21728 446 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 NASPP49321 788 aaPredicted RBP17.29■□□□□ 0.36
COL18A1-205ENST00000423214 PSMC1P62191 440 aaKnown RBP17.29■□□□□ 0.36
COL18A1-205ENST00000423214 ASIC1P78348 528 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 MAPRE1Q15691 268 aaKnown RBP17.29■□□□□ 0.36
COL18A1-205ENST00000423214 ZNF77Q15935 545 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 DUOXA2Q1HG44 320 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 SOWAHAQ2M3V2 549 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 DPH6Q7L8W6 267 aa17.29■□□□□ 0.36
COL18A1-205ENST00000423214 RIN3Q8TB24 985 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms