RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 TFIP11Q9UBB9 837 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 GMEB2Q9UKD1 530 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 MAGED2Q9UNF1 606 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 ZNF638Q14966 1978 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 F13A1P00488 732 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 ZSCAN22P10073 491 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 CYP2F1P24903 491 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 HOXD13P35453 343 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 MAGEA11P43364 429 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 SATB1Q01826 763 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 TNK2Q07912 1038 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 EHHADHQ08426 723 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 CCINQ13939 588 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 GAS6Q14393 721 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 MAPRE1Q15691 268 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 SNRNP35Q16560 246 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 DDR2Q16832 855 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 SDHAF4Q5VUM1 108 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 ATL3Q6DD88 541 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 Q6ZS52 159 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 UNC13DQ70J99 1090 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 HS2ST1Q7LGA3 356 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 DCLK2Q8N568 766 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 MAB21L3Q8N8X9 362 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 TTC8Q8TAM2 541 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 ZNF507Q8TCN5 953 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 KBTBD7Q8WVZ9 684 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 USP13Q92995 863 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 RMDN1Q96DB5 314 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 MYRFLQ96LU7 910 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 CEP295NLQ96MC4 621 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 CGRRF1Q99675 332 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 SYT15Q9BQS2 421 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 RBM12Q9NTZ6 932 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 TDP1Q9NUW8 608 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 FAM13BQ9NYF5 915 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 GTF3C4Q9UKN8 822 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 CDH9Q9ULB4 789 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 RAB23Q9ULC3 237 aa12.38□□□□□ -0.43
SQSTM1-203ENST00000422245 TGFB1I1O43294 461 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 TADA3O75528 432 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 WARSP23381 471 aaKnown RBP12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 ME1P48163 572 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 AMPD2Q01433 879 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 PUM1Q14671 1186 aaKnown RBP eCLIP12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 PSMD6Q15008 389 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 PON2Q15165 354 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 PDGFRLQ15198 375 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 CCDC142Q17RM4 750 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 BMT2Q1RMZ1 405 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 WDR44Q5JSH3 913 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 FOXD4L5Q5VV16 416 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 TXNDC8Q6A555 127 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 SCARA3Q6AZY7 606 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 CC2D1AQ6P1N0 951 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 FAM171BQ6P995 826 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 VSTM1Q6UX27 236 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 XXYLT1Q8NBI6 393 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 STKLD1Q8NE28 680 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 SCFD1Q8WVM8 642 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 FOXD4L4Q8WXT5 416 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 FNBP1Q96RU3 617 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 FAM83CQ9BQN1 747 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 CGNQ9P2M7 1197 aaKnown RBP12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 CCL26Q9Y258 94 aa12.37□□□□□ -0.43
SQSTM1-203ENST00000422245 TRAV19A0A0A6YYK7 116 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 PVALEFA0A1B0GWK0 134 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 POLR2DO15514 142 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 HCRTO43612 131 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 DLATP10515 647 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 SDHBP21912 280 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 HOXA6P31267 233 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 CNR2P34972 360 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 PDE6CP51160 858 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 CYP2J2P51589 502 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 PSMC1P62191 440 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 LMNB2Q03252 620 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 FAM160A1Q05DH4 1040 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 CYP24A1Q07973 514 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 GRSF1Q12849 480 aaKnown RBP eCLIP12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 USP4Q13107 963 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 RUNX3Q13761 415 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 MTF1Q14872 753 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 RESP18Q5W5W9 173 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 LAIR1Q6GTX8 287 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 TRAPPC11Q7Z392 1133 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 LONP2Q86WA8 852 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 SCN4BQ8IWT1 228 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 NELFCDQ8IXH7 590 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 C12orf56Q8IXR9 622 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 FSIP1Q8NA03 581 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 GOLGA5Q8TBA6 731 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 MYLPFQ96A32 169 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 EXOC4Q96A65 974 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 SPATA17Q96L03 361 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 TRPC7Q9HCX4 862 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 HPS4Q9NQG7 708 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 GKN1Q9NS71 199 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 EHD2Q9NZN4 543 aa12.36□□□□□ -0.43
SQSTM1-203ENST00000422245 K7ESF4 209 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms