RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 ZNF233A6NK53 670 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 PP2D1A8MPX8 630 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 F8VZ95 297 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 FGFR1OPO95684 399 aaKnown RBP9.9□□□□□ -0.82
SNHG3-201ENST00000413987 MT-CO1P00395 513 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 ICAM1P05362 532 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 MYBP10242 640 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 CYP2C8P10632 490 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 DRG2P55039 364 aaKnown RBP9.9□□□□□ -0.82
SNHG3-201ENST00000413987 SP140Q13342 867 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 TAF12Q16514 161 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 SPDYCQ5MJ68 293 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 TMEM240Q5SV17 173 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 FKBP15Q5T1M5 1219 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 B3GNT9Q6UX72 402 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 PACS1Q6VY07 963 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 PRRT2Q7Z6L0 340 aaPredicted RBP9.9□□□□□ -0.82
SNHG3-201ENST00000413987 FAM228AQ86W67 206 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 SMYD4Q8IYR2 804 aaPredicted RBP9.9□□□□□ -0.82
SNHG3-201ENST00000413987 CACNA2D3Q8IZS8 1091 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 OR52K2Q8NGK3 314 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 CYP2W1Q8TAV3 490 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 C12orf42Q96LP6 360 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 RBM14Q96PK6 669 aaKnown RBP9.9□□□□□ -0.82
SNHG3-201ENST00000413987 LACRTQ9GZZ8 138 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 TRIT1Q9H3H1 467 aaKnown RBP9.9□□□□□ -0.82
SNHG3-201ENST00000413987 THAP9Q9H5L6 903 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 COL20A1Q9P218 1284 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 PCDHGB5Q9Y5G0 923 aa9.9□□□□□ -0.82
SNHG3-201ENST00000413987 MACROD2A1Z1Q3 448 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 C5orf60A6NFR6 353 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 H0Y626 953 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 PQBP1O60828 265 aaKnown RBP9.9□□□□□ -0.83
SNHG3-201ENST00000413987 SEC24CP53992 1094 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 C21orf58P58505 322 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 CFAP221Q4G0U5 840 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 ZNF362Q5T0B9 420 aaPredicted RBP9.9□□□□□ -0.83
SNHG3-201ENST00000413987 SNRNP48Q6IEG0 339 aaKnown RBP9.9□□□□□ -0.83
SNHG3-201ENST00000413987 CHADLQ6NUI6 762 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 RUFY4Q6ZNE9 571 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 NUP54Q7Z3B4 507 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 SLC35G2Q8TBE7 412 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 ZNF507Q8TCN5 953 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 KISS1RQ969F8 398 aaPredicted RBP9.9□□□□□ -0.83
SNHG3-201ENST00000413987 CCDC74AQ96AQ1 378 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 EPSTI1Q96J88 318 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 ANO3Q9BYT9 981 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 TXLNGYQ9BZA5 131 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 TMBIM4Q9HC24 238 aa9.9□□□□□ -0.83
SNHG3-201ENST00000413987 ZNF214Q9UL59 606 aaPredicted RBP9.9□□□□□ -0.83
SNHG3-201ENST00000413987 A0A1W2PQJ5 194 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 MCF2LO15068 1137 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 SLC7A4O43246 635 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 PLA2G6O60733 806 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 MYCLP12524 364 aaPredicted RBP9.89□□□□□ -0.83
SNHG3-201ENST00000413987 ATP5F1P24539 256 aaPredicted RBP9.89□□□□□ -0.83
SNHG3-201ENST00000413987 GCKP35557 465 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 PPM1AP35813 382 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 SCTRP47872 440 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 HUNKP57058 714 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 CENPCQ03188 943 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 ADCY2Q08462 1091 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 TBC1D8BQ0IIM8 1120 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 PPIL2Q13356 520 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 RIPK1Q13546 671 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 COG2Q14746 738 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 PCBP2Q15366 365 aaKnown RBP eCLIP9.89□□□□□ -0.83
SNHG3-201ENST00000413987 CCDC85BQ15834 202 aaPredicted RBP9.89□□□□□ -0.83
SNHG3-201ENST00000413987 FIGNQ5HY92 759 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 KRT25Q7Z3Z0 450 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 NEK8Q86SG6 692 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 C4orf32Q8N8J7 132 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 ANKRD52Q8NB46 1076 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 REPS2Q8NFH8 660 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 RASSF8Q8NHQ8 419 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 FBXO30Q8TB52 745 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 TCP11Q8WWU5 503 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 CLEC4DQ8WXI8 215 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 HSPBAP1Q96EW2 488 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 EXOC2Q96KP1 924 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 DHRS1Q96LJ7 313 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 CCDC42Q96M95 316 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 FERD3LQ96RJ6 166 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 PPP1R16BQ96T49 567 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 HAUS2Q9NVX0 235 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 BTBD7Q9P203 1132 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 AASSQ9UDR5 926 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 LRFN2Q9ULH4 789 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 PCDHGB6Q9Y5F9 930 aa9.89□□□□□ -0.83
SNHG3-201ENST00000413987 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.89□□□□□ -0.83
SNHG3-201ENST00000413987 ARPC4-TTLL3A0A0A6YYG9 625 aa9.88□□□□□ -0.83
SNHG3-201ENST00000413987 GCOM1H8Y6P7 765 aaPredicted RBP9.88□□□□□ -0.83
SNHG3-201ENST00000413987 TRAPPC3O43617 180 aa9.88□□□□□ -0.83
SNHG3-201ENST00000413987 PRKD3O94806 890 aa9.88□□□□□ -0.83
SNHG3-201ENST00000413987 MYZAPP0CAP1 466 aa9.88□□□□□ -0.83
SNHG3-201ENST00000413987 TRIM21P19474 475 aaKnown RBP9.88□□□□□ -0.83
SNHG3-201ENST00000413987 MATR3P43243 847 aaKnown RBP eCLIP9.88□□□□□ -0.83
SNHG3-201ENST00000413987 CENPAP49450 140 aa9.88□□□□□ -0.83
SNHG3-201ENST00000413987 SMAD4Q13485 552 aaKnown RBP9.88□□□□□ -0.83
SNHG3-201ENST00000413987 SEZ6Q53EL9 994 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms