RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 UGCGQ16739 394 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 PLEKHG4Q58EX7 1191 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TDRD10Q5VZ19 366 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 AAGABQ6PD74 315 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 MTHFD1LQ6UB35 978 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TAS1R3Q7RTX0 852 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 NET1Q7Z628 596 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 MICAL1Q8TDZ2 1067 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC44A1Q8WWI5 657 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 STON2Q8WXE9 905 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 POMGNT1Q8WZA1 660 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 USP6NLQ92738 828 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GLMNQ92990 594 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 LRRC39Q96DD0 335 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 BICD1Q96G01 975 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC38A10Q9HBR0 1119 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 ZDHHC7Q9NXF8 308 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TMOD2Q9NZR1 351 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TBK1Q9UHD2 729 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GGT7Q9UJ14 662 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 DPPA5A6NC42 116 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 MAGEA13PA6NCF6 341 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 G3V3G9 751 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TRDMT1O14717 391 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CHADO15335 359 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 PSMG1O95456 288 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 C1QAP02745 245 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 ASNSP08243 561 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GLRA2P23416 452 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 OAZ1P54368 228 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GPS1Q13098 491 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 SURF1Q15526 300 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 XKR9Q5GH70 373 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CWF19L1Q69YN2 538 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC30A9Q6PML9 568 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 MFSD7Q6UXD7 560 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GSTA5Q7RTV2 222 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TMPRSS6Q8IU80 811 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 ACER1Q8TDN7 264 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CPA5Q8WXQ8 436 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 BSNDQ8WZ55 320 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 AZIN2Q96A70 460 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CDHR1Q96JP9 859 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CYTH2Q99418 400 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GMLQ99445 158 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 PAFAH2Q99487 392 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 FHDC1Q9C0D6 1143 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 SLCO1B3Q9NPD5 702 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 NMRK1Q9NWW6 199 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 WDR35Q9P2L0 1181 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TCEAL9Q9UHQ7 104 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CCPG1Q9ULG6 757 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF148Q9UQR1 794 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC4A7Q9Y6M7 1214 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CNTNAP2Q9UHC6 1331 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 PLXNA1Q9UIW2 1896 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GOLGA8IPA6NC78 632 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 GOLGA8JA6NMD2 632 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 BIRC5O15392 142 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ASS1P00966 412 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT4P19013 534 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 SP100P23497 879 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 STIP1P31948 543 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 NAMPTP43490 491 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 CTCFP49711 727 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC25A11Q02978 314 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PDIA2Q13087 525 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TRMT5Q32P41 509 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 DNAL1Q4LDG9 190 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM102BQ5T8I3 360 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ZPBP2Q6X784 338 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM47EQ6ZV65 393 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ZBED8Q8IZ13 594 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM35BQ8NCS4 154 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 CMASQ8NFW8 434 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 IL31RAQ8NI17 732 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ADAMTS19Q8TE59 1207 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF606Q8WXB4 792 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 CPT1BQ92523 772 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 CCDC127Q96BQ5 260 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 MTBPQ96DY7 904 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ZBED3Q96IU2 234 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PWWP2AQ96N64 755 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PDCD2LQ9BRP1 358 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TSSK1BQ9BXA7 367 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 DHX33Q9H6R0 707 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 MLXIPLQ9NP71 852 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PXMP2Q9NR77 195 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TOPORSQ9NS56 1045 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 CHORDC1Q9UHD1 332 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ANGPTL2Q9UKU9 493 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TEX264Q9Y6I9 313 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TNS1Q9HBL0 1735 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 A0A0B4J269 797 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 A0A1W2PPM1 405 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 HNRNPDLO14979 420 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ATG7O95352 703 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT1P04264 644 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PSAPP07602 524 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 SLURP2P0DP57 97 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms