RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MGAT2Q10469 447 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 PGS1Q32NB8 556 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 SYCP2LQ5T4T6 812 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 CLEC14AQ86T13 490 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 KBTBD3Q8NAB2 608 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 REPS2Q8NFH8 660 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 RSAD2Q8WXG1 361 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 RELTQ969Z4 430 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 DACT3Q96B18 629 aaPredicted RBP7.38□□□□□ -1.23
USP40-202ENST00000409945 NT5C1BQ96P26 610 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 PARK7Q99497 189 aaKnown RBP7.38□□□□□ -1.23
USP40-202ENST00000409945 FSD1Q9BTV5 496 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 LDAHQ9H6V9 325 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 L2HGDHQ9H9P8 463 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 ZNF287Q9HBT7 754 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 MCM9Q9NXL9 1143 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 TMOD4Q9NZQ9 345 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 FAM184BQ9ULE4 1060 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 FAM50BQ9Y247 325 aa7.38□□□□□ -1.23
USP40-202ENST00000409945 FRMPD2Q68DX3 1309 aaPredicted RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 AKR1B10O60218 316 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 SP3Q02447 781 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 GADL1Q6ZQY3 521 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 ANKRD23Q86SG2 305 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 ADGRA1Q86SQ6 560 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 MBD6Q96DN6 1003 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 MAP3K14Q99558 947 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 PDCD2LQ9BRP1 358 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 NACAP1Q9BZK3 213 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 GEMIN8Q9NWZ8 242 aaKnown RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 SWAP70Q9UH65 585 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 CNOT6Q9ULM6 557 aaKnown RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 RBM8AQ9Y5S9 174 aaKnown RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 RNF113AO15541 343 aaKnown RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 MBD4O95243 580 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 HOXD10P28358 340 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 CSF2RBP32927 897 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 CRHR2Q13324 411 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 MST1LQ2TV78 715 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 CERKLQ49MI3 558 aaPredicted RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 OGFOD2Q6N063 350 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 TICAM2Q86XR7 235 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 RHOT1Q8IXI2 618 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 SMCR8Q8TEV9 937 aaPredicted RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 BRI3BPQ8WY22 251 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 RBM12Q9NTZ6 932 aaKnown RBP7.37□□□□□ -1.23
USP40-202ENST00000409945 SLC4A4Q9Y6R1 1079 aa7.37□□□□□ -1.23
USP40-202ENST00000409945 DOCK1Q14185 1865 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 CASP8AP2Q9UKL3 1982 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 C19orf81C9J6K1 198 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 PDHXO00330 501 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 CHGBP05060 677 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 SLC3A2P08195 630 aaKnown RBP7.36□□□□□ -1.23
USP40-202ENST00000409945 TARDBPQ13148 414 aaKnown RBP eCLIP7.36□□□□□ -1.23
USP40-202ENST00000409945 CCDC178Q5BJE1 867 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 Q6ZUG5 572 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 TXNDC5Q8NBS9 432 aaKnown RBP7.36□□□□□ -1.23
USP40-202ENST00000409945 EXOC6Q8TAG9 804 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 EVI5LQ96CN4 794 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 RIOK1Q9BRS2 568 aaKnown RBP7.36□□□□□ -1.23
USP40-202ENST00000409945 SH2D4AQ9H788 454 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 ARMT1Q9H993 441 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 ARPP21Q9UBL0 812 aaPredicted RBP7.36□□□□□ -1.23
USP40-202ENST00000409945 SLC45A1Q9Y2W3 748 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 AFG3L2Q9Y4W6 797 aa7.36□□□□□ -1.23
USP40-202ENST00000409945 MYO5AQ9Y4I1 1855 aaKnown RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 FOCADQ5VW36 1801 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 MYH1P12882 1939 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 A0A0G2JLL6 359 aaPredicted RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 BTBD19C9JJ37 291 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 MPHOSPH10O00566 681 aaKnown RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 TPP1O14773 563 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 TLR2O60603 784 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 AMY1AP04745 511 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 SYN1P17600 705 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 FPR1P21462 350 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 LINC00310P59036 64 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 SPP2Q13103 211 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 SLC4A8Q2Y0W8 1093 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 PRRT2Q7Z6L0 340 aaPredicted RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 CHD1LQ86WJ1 897 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 LCORLQ8N3X6 602 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 CAMKK1Q8N5S9 505 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 GPR156Q8NFN8 814 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 OR14K1Q8NGZ2 314 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 EDC3Q96F86 508 aaKnown RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 ADI1Q9BV57 179 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 PCDH18Q9HCL0 1135 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 CTDP1Q9Y5B0 961 aaPredicted RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 LAMB1P07942 1786 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 MYH7P12883 1935 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 SH3D21A4FU49 640 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 HIP1O00291 1037 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 WASP42768 502 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 TDO2P48775 406 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 PRMT2P55345 433 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 IRX3P78415 501 aaPredicted RBP7.35□□□□□ -1.23
USP40-202ENST00000409945 XP32Q5T750 250 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 IL31Q6EBC2 164 aa7.35□□□□□ -1.23
USP40-202ENST00000409945 FBXO46Q6PJ61 603 aaPredicted RBP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms