RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 C18orf8Q96DM3 657 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 VWCEQ96DN2 955 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 MCEEQ96PE7 176 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 MED10Q9BTT4 135 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 DNAI2Q9GZS0 605 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 NRDE2Q9H7Z3 1164 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 PARVAQ9NVD7 372 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 ALG6Q9Y672 507 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 KCNK3O14649 394 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 MTA2O94776 668 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 COMTP21964 271 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 LHX1P48742 406 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 HADHBP55084 474 aaKnown RBP13.16□□□□□ -0.3
CHMP3-204ENST00000409727 RNASE9P60153 205 aaKnown RBP13.16□□□□□ -0.3
CHMP3-204ENST00000409727 RPL7AP62424 266 aaKnown RBP13.16□□□□□ -0.3
CHMP3-204ENST00000409727 PDE4CQ08493 712 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 TCEAL1Q15170 157 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 STILQ15468 1287 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 ARHGAP17Q68EM7 881 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 PLEKHA7Q6IQ23 1121 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 C11orf63Q6NUN7 778 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 MSANTD4Q8NCY6 345 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 TSC1Q92574 1164 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 SYT15Q9BQS2 421 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 MRPL47Q9HD33 250 aaKnown RBP13.16□□□□□ -0.3
CHMP3-204ENST00000409727 CRTAC1Q9NQ79 661 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 SMARCAL1Q9NZC9 954 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 EHD2Q9NZN4 543 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 SCINQ9Y6U3 715 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 NT5C1B-RDH14C9J2C7 533 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 E5RJQ4 531 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 MYO1FO00160 1098 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 HOXA2O43364 376 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 SPOPO43791 374 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 TADA2AO75478 443 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 NAA30Q147X3 362 aaPredicted RBP13.16□□□□□ -0.3
CHMP3-204ENST00000409727 PMF1Q6P1K2 205 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 DCUN1D2Q6PH85 259 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 CRIPAKQ8N1N5 446 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 FEZF2Q8TBJ5 459 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 IPO4Q8TEX9 1081 aaKnown RBP13.16□□□□□ -0.3
CHMP3-204ENST00000409727 MS4A14Q96JA4 679 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 SELENOOQ9BVL4 669 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 ABCB6Q9NP58 842 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 STRIP2Q9ULQ0 834 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 TTC3P53804 2025 aa13.16□□□□□ -0.3
CHMP3-204ENST00000409727 MYBPHLA2RUH7 354 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 M0QZQ0 153 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 NRP1O14786 923 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 KIAA0355O15063 1070 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 TCP1P17987 556 aaKnown RBP13.15□□□□□ -0.3
CHMP3-204ENST00000409727 RFC2P35250 354 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 WHAMMP3Q1A5X7 153 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 PKDCCQ504Y2 493 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 OVOS1Q6IE37 1185 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 CEP57Q86XR8 500 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 XYLT1Q86Y38 959 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 FUKQ8N0W3 1084 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 ANKRD52Q8NB46 1076 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 SUSD3Q96L08 255 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 RTP3Q9BQQ7 232 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 METTL5Q9NRN9 209 aaKnown RBP13.15□□□□□ -0.3
CHMP3-204ENST00000409727 USTQ9Y2C2 406 aa13.15□□□□□ -0.3
CHMP3-204ENST00000409727 SSR1P43307 286 aaKnown RBP13.14□□□□□ -0.31
CHMP3-204ENST00000409727 MARCKSL1P49006 195 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 SLC11A1P49279 550 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 RABGGTBP53611 331 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 BCAT1P54687 386 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 DEFB103AP81534 67 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 BST2Q10589 180 aaKnown RBP13.14□□□□□ -0.31
CHMP3-204ENST00000409727 TUBB2AQ13885 445 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 CCDC181Q5TID7 509 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 OR6B2Q6IFH4 312 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 MFSD5Q6N075 450 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 OTOP2Q7RTS6 562 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 CREG2Q8IUH2 290 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 SCUBE3Q8IX30 993 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 TMEM199Q8N511 208 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 C3orf20Q8ND61 904 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 OR10T2Q8NGX3 314 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 SLC35F5Q8WV83 523 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 PCED1BQ96HM7 432 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 HES6Q96HZ4 224 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 CALR3Q96L12 384 aaKnown RBP13.14□□□□□ -0.31
CHMP3-204ENST00000409727 B3GALT6Q96L58 329 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 TMEM209Q96SK2 561 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 TUBB2BQ9BVA1 445 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 MIS12Q9H081 205 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 KRT82Q9NSB4 513 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 DSEQ9UL01 958 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 CDH9Q9ULB4 789 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 MICAL3Q7RTP6 2002 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 TCRBV5S1A1TA0A578 114 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 PDE2AO00408 941 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-204ENST00000409727 GRAP2O75791 330 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 BEST1O76090 585 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 ALDH2P05091 517 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 FAM163BP0C2L3 166 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 KRT3P12035 628 aa13.14□□□□□ -0.31
CHMP3-204ENST00000409727 LCP1P13796 627 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms