RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 THEGQ9P2T0 379 aa12.49□□□□□ -0.41
HMGB1-206ENST00000405805 IP6K2Q9UHH9 426 aa12.49□□□□□ -0.41
HMGB1-206ENST00000405805 ARIH1Q9Y4X5 557 aaPredicted RBP12.49□□□□□ -0.41
HMGB1-206ENST00000405805 NR3C2P08235 984 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 GSTA1P08263 222 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 EFTUD2Q15029 972 aaKnown RBP eCLIP12.48□□□□□ -0.415e-16■■□□□ 13.9
HMGB1-206ENST00000405805 CYTH1Q15438 398 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 CLEC16AQ2KHT3 1053 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 ZNF699Q32M78 642 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 PPP1R15BQ5SWA1 713 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 FAM102AQ5T9C2 384 aaPredicted RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 MROH9Q5TGP6 573 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 MIS18BP1Q6P0N0 1132 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 ECHDC2Q86YB7 292 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 TCP10LQ8TDR4 215 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 SLC26A7Q8TE54 656 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 MPP4Q96JB8 637 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 RIT2Q99578 217 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 CNGB3Q9NQW8 809 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 DNAAF2Q9NVR5 837 aaKnown RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 PSMC3IPQ9P2W1 217 aaPredicted RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 RBMX2Q9Y388 322 aaKnown RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 FRMPD4Q14CM0 1322 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 CYP3A7-CYP3A51PA0A087WV96 503 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 BGNP21810 368 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 CYP3A7P24462 503 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 PRKCEQ02156 737 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 SPATA18Q8TC71 538 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 ZNF317Q96PQ6 595 aaPredicted RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 TBC1D10AQ9BXI6 508 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 PRDM16Q9HAZ2 1276 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 E2F6O75461 281 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 PROSCO94903 275 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 NRLP54845 237 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 ADARP55265 1226 aaKnown RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 NLRP11P59045 1033 aaKnown RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 OTUD4Q01804 1114 aaKnown RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 PTK7Q13308 1070 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 RGS9BPQ6ZS82 235 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 EIF1ADQ8N9N8 165 aaKnown RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 UBA3Q8TBC4 463 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 GRAMD1AQ96CP6 724 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 ATG4CQ96DT6 458 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 WRNIP1Q96S55 665 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 IDI2Q9BXS1 227 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 FBXO6Q9NRD1 293 aaPredicted RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 PCMTD2Q9NV79 361 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 GPATCH2LQ9NWQ4 482 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 FEM1BQ9UK73 627 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 IQANK1A0A1B0GTG1 560 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 WDR46O15213 610 aaKnown RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 KRT76Q01546 638 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 CBX3Q13185 183 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 STYK1Q6J9G0 422 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 MCPH1Q8NEM0 835 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 AKT1S1Q96B36 256 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 RPAP3Q9H6T3 665 aaPredicted RBP12.48□□□□□ -0.41
HMGB1-206ENST00000405805 MANSC1Q9H8J5 431 aa12.48□□□□□ -0.41
HMGB1-206ENST00000405805 NCANO14594 1321 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 PRPSAP2O60256 369 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 SLC1A1P43005 524 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 HMGCS2P54868 508 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 ESRRGP62508 458 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 SFSWAPQ12872 951 aaKnown RBP12.47□□□□□ -0.41
HMGB1-206ENST00000405805 MKRN3Q13064 507 aaKnown RBP12.47□□□□□ -0.41
HMGB1-206ENST00000405805 MPP2Q14168 576 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 FAM71AQ8IYT1 594 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 AGGF1Q8N302 714 aaeCLIP12.47□□□□□ -0.414e-7■■■■□ 25.1
HMGB1-206ENST00000405805 MTMR12Q9C0I1 747 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 ZNRF3Q9ULT6 936 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 MYL2P10916 166 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 ZDHHC14Q8IZN3 488 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 GMCL1Q96IK5 515 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 TTC25Q96NG3 672 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 PAFAH2Q99487 392 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 ADPGKQ9BRR6 497 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 COL4A1P02462 1669 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 TRIM49D1C9J1S8 452 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 KCNN4O15554 427 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 CFHP08603 1231 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 CHRNB2P17787 502 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 CCND2P30279 289 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 FOXN2P32314 431 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 JAK3P52333 1124 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 SESN2P58004 480 aaPredicted RBP12.47□□□□□ -0.41
HMGB1-206ENST00000405805 CYP24A1Q07973 514 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 GJC2Q5T442 439 aaPredicted RBP12.47□□□□□ -0.41
HMGB1-206ENST00000405805 RSPH3Q86UC2 560 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 ZNF354CQ86Y25 554 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 DAW1Q8N136 415 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 GLIS1Q8NBF1 620 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 RNF149Q8NC42 400 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 VPS11Q9H270 941 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 KIAA1586Q9HCI6 787 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 RNF19AQ9NV58 838 aa12.47□□□□□ -0.41
HMGB1-206ENST00000405805 STRCQ7RTU9 1775 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 RAP1GAPP47736 663 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 TMEM259Q4ZIN3 620 aa12.46□□□□□ -0.41
HMGB1-206ENST00000405805 KRT80Q6KB66 452 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms