RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 ATP13A4Q4VNC1 1196 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 ACAD10Q6JQN1 1059 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 MFSD5Q6N075 450 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 SPATA31D4Q6ZUB0 917 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 VPS36Q86VN1 386 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 MCOLN2Q8IZK6 566 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 LRRC52Q8N7C0 313 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 CTNNBL1Q8WYA6 563 aaPredicted RBP12.39□□□□□ -0.43
SKA3-203ENST00000400018 PCED1BQ96HM7 432 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 MED10Q9BTT4 135 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 VN1R3Q9BXE9 311 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 NUDT5Q9UKK9 219 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 MYO6Q9UM54 1294 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 SLC27A5Q9Y2P5 690 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 SYNJ2BP-COX16A0A087WUM0 186 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 BDNFP23560 247 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 CASQ1P31415 396 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 ATICP31939 592 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 ATXN1P54253 815 aaKnown RBP12.39□□□□□ -0.43
SKA3-203ENST00000400018 SV2CQ496J9 727 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 SGO2Q562F6 1265 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 DAAM2Q86T65 1068 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 FUKQ8N0W3 1084 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 B3GALNT2Q8NCR0 500 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 KRT35Q92764 455 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 IQCDQ96DY2 449 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 COX16Q9P0S2 106 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 CNTN6Q9UQ52 1028 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 DERAQ9Y315 318 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 BZW2Q9Y6E2 419 aaKnown RBP12.39□□□□□ -0.43
SKA3-203ENST00000400018 RFX1P22670 979 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 DSC1Q08554 894 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 CDO1Q16878 200 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 TXNRD3NBQ6F5E7 133 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 ENOSF1Q7L5Y1 443 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 ATAD1Q8NBU5 361 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 ZNF560Q96MR9 790 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 MCEEQ96PE7 176 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.38□□□□□ -0.43
SKA3-203ENST00000400018 VWA8A3KMH1 1905 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 CAND2O75155 1236 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 RTN2O75298 545 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 EOMESO95936 686 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 CYP1A1P04798 512 aaPredicted RBP12.38□□□□□ -0.43
SKA3-203ENST00000400018 GALTP07902 379 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 CYP2F1P24903 491 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 GPD2P43304 727 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 SSR1P43307 286 aaKnown RBP12.38□□□□□ -0.43
SKA3-203ENST00000400018 PITX1P78337 314 aaPredicted RBP12.38□□□□□ -0.43
SKA3-203ENST00000400018 INCA1Q0VD86 236 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 PTP4A2Q12974 167 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 TRNP1Q6NT89 227 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 NPAS4Q8IUM7 802 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 FAM118BQ9BPY3 351 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 FTHL17Q9BXU8 183 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 ADAM33Q9BZ11 813 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 ISCUQ9H1K1 167 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 CRISPLD1Q9H336 500 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 SYNCQ9H7C4 482 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 VRTNQ9H8Y1 702 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 SLC38A7Q9NVC3 462 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 CALCOCO1Q9P1Z2 691 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 ANAPC7Q9UJX3 599 aa12.38□□□□□ -0.43
SKA3-203ENST00000400018 P4HA1P13674 534 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 PTPN1P18031 435 aaKnown RBP12.37□□□□□ -0.43
SKA3-203ENST00000400018 MON1BQ7L1V2 547 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 TPCN2Q8NHX9 752 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 SCAMP5Q8TAC9 235 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 URGCPQ8TCY9 931 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 TRAIPQ9BWF2 469 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 TRIOBPQ9H2D6 2365 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 TANC1Q9C0D5 1861 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 DOCK6Q96HP0 2047 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 XPOTO43592 962 aaKnown RBP12.37□□□□□ -0.43
SKA3-203ENST00000400018 DGKIO75912 1065 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 BTG3Q14201 252 aaPredicted RBP12.37□□□□□ -0.43
SKA3-203ENST00000400018 SLC39A12Q504Y0 691 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 OVOS1Q6IE37 1185 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 CNKSR3Q6P9H4 555 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 NT5DC4Q86YG4 428 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 NETO2Q8NC67 525 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 ZNF564Q8TBZ8 553 aaPredicted RBP12.37□□□□□ -0.43
SKA3-203ENST00000400018 ADAM32Q8TC27 787 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 TOP1MTQ969P6 601 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 YME1L1Q96TA2 773 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 SYT15Q9BQS2 421 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 METTL5Q9NRN9 209 aaKnown RBP12.37□□□□□ -0.43
SKA3-203ENST00000400018 TMPRSS4Q9NRS4 437 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 KRT82Q9NSB4 513 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 GDAP2Q9NXN4 497 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 ABI2Q9NYB9 513 aaPredicted RBP12.37□□□□□ -0.43
SKA3-203ENST00000400018 PRKAG2Q9UGJ0 569 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 FAN1Q9Y2M0 1017 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 SQORQ9Y6N5 450 aa12.37□□□□□ -0.43
SKA3-203ENST00000400018 FNDC1Q4ZHG4 1894 aaPredicted RBP12.36□□□□□ -0.43
SKA3-203ENST00000400018 ANKRD62A6NC57 917 aa12.36□□□□□ -0.43
SKA3-203ENST00000400018 F8VP50 259 aa12.36□□□□□ -0.43
SKA3-203ENST00000400018 PDE2AO00408 941 aaPredicted RBP12.36□□□□□ -0.43
SKA3-203ENST00000400018 RFC1P35251 1148 aaPredicted RBP12.36□□□□□ -0.43
SKA3-203ENST00000400018 KCNJ6P48051 423 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms