RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PPP2R2CQ9Y2T4 447 aa15.07■□□□□ 0
SKA1-202ENST00000398452 PCDHA13Q9Y5I0 950 aa15.07■□□□□ 0
SKA1-202ENST00000398452 OR6C75A6NL08 312 aa15.06■□□□□ 0
SKA1-202ENST00000398452 DDX3XO00571 662 aaKnown RBP eCLIP15.06■□□□□ 02e-9■■■■■ 31.8
SKA1-202ENST00000398452 KRT86O43790 486 aa15.06■□□□□ 0
SKA1-202ENST00000398452 RTN2O75298 545 aa15.06■□□□□ 0
SKA1-202ENST00000398452 URODP06132 367 aa15.06■□□□□ 0
SKA1-202ENST00000398452 LMO2P25791 158 aa15.06■□□□□ 0
SKA1-202ENST00000398452 CA8P35219 290 aa15.06■□□□□ 0
SKA1-202ENST00000398452 VAV2P52735 878 aa15.06■□□□□ 0
SKA1-202ENST00000398452 RABGGTBP53611 331 aa15.06■□□□□ 0
SKA1-202ENST00000398452 PSMC1P62191 440 aaKnown RBP15.06■□□□□ 0
SKA1-202ENST00000398452 CYP27A1Q02318 531 aa15.06■□□□□ 0
SKA1-202ENST00000398452 GOLGA7BQ2TAP0 167 aa15.06■□□□□ 0
SKA1-202ENST00000398452 ASTE1Q2TB18 679 aaPredicted RBP15.06■□□□□ 0
SKA1-202ENST00000398452 MDH1BQ5I0G3 518 aa15.06■□□□□ 0
SKA1-202ENST00000398452 VARS2Q5ST30 1063 aaKnown RBP15.06■□□□□ 0
SKA1-202ENST00000398452 LIN9Q5TKA1 542 aa15.06■□□□□ 0
SKA1-202ENST00000398452 ARHGAP17Q68EM7 881 aa15.06■□□□□ 0
SKA1-202ENST00000398452 CD300LGQ6UXG3 332 aa15.06■□□□□ 0
SKA1-202ENST00000398452 C4orf50Q6ZRC1 276 aa15.06■□□□□ 0
SKA1-202ENST00000398452 PASD1Q8IV76 773 aa15.06■□□□□ 0
SKA1-202ENST00000398452 IPO4Q8TEX9 1081 aaKnown RBP15.06■□□□□ 0
SKA1-202ENST00000398452 NKX2-4Q9H2Z4 354 aa15.06■□□□□ 0
SKA1-202ENST00000398452 PRDM12Q9H4Q4 367 aa15.06■□□□□ 0
SKA1-202ENST00000398452 TRMT1Q9NXH9 659 aaKnown RBP15.06■□□□□ 0
SKA1-202ENST00000398452 MSRAQ9UJ68 235 aa15.06■□□□□ 0
SKA1-202ENST00000398452 TSPAN16Q9UKR8 245 aa15.06■□□□□ 0
SKA1-202ENST00000398452 ADGRG1Q9Y653 693 aa15.06■□□□□ 0
SKA1-202ENST00000398452 F8W810 466 aa15.05■□□□□ -0
SKA1-202ENST00000398452 O00370 1275 aa15.05■□□□□ -0
SKA1-202ENST00000398452 LPXNO60711 386 aa15.05■□□□□ -0
SKA1-202ENST00000398452 MICAL2O94851 1124 aa15.05■□□□□ -0
SKA1-202ENST00000398452 OAZ2O95190 189 aa15.05■□□□□ -0
SKA1-202ENST00000398452 LCA5LO95447 670 aa15.05■□□□□ -0
SKA1-202ENST00000398452 SOD2P04179 222 aa15.05■□□□□ -0
SKA1-202ENST00000398452 SETSIPP0DME0 302 aa15.05■□□□□ -0
SKA1-202ENST00000398452 CHRNB2P17787 502 aa15.05■□□□□ -0
SKA1-202ENST00000398452 FGFR3P22607 806 aa15.05■□□□□ -0
SKA1-202ENST00000398452 IGFBP6P24592 240 aaPredicted RBP15.05■□□□□ -0
SKA1-202ENST00000398452 ADORA2BP29275 332 aa15.05■□□□□ -0
SKA1-202ENST00000398452 CTNNB1P35222 781 aa15.05■□□□□ -0
SKA1-202ENST00000398452 BCAT1P54687 386 aa15.05■□□□□ -0
SKA1-202ENST00000398452 NAP1L1P55209 391 aaKnown RBP15.05■□□□□ -0
SKA1-202ENST00000398452 CREMQ03060 361 aa15.05■□□□□ -0
SKA1-202ENST00000398452 NFE2Q16621 373 aaPredicted RBP15.05■□□□□ -0
SKA1-202ENST00000398452 CLEC16AQ2KHT3 1053 aa15.05■□□□□ -0
SKA1-202ENST00000398452 INTS6LQ5JSJ4 861 aaKnown RBP15.05■□□□□ -0
SKA1-202ENST00000398452 ACAD10Q6JQN1 1059 aa15.05■□□□□ -0
SKA1-202ENST00000398452 LCLAT1Q6UWP7 414 aa15.05■□□□□ -0
SKA1-202ENST00000398452 TMEM92Q6UXU6 159 aa15.05■□□□□ -0
SKA1-202ENST00000398452 SPATA2LQ8IUW3 424 aaPredicted RBP15.05■□□□□ -0
SKA1-202ENST00000398452 LNX1Q8TBB1 728 aaPredicted RBP15.05■□□□□ -0
SKA1-202ENST00000398452 KIAA1524Q8TCG1 905 aa15.05■□□□□ -0
SKA1-202ENST00000398452 DDX1Q92499 740 aaKnown RBP15.05■□□□□ -0
SKA1-202ENST00000398452 GPR62Q9BZJ7 368 aa15.05■□□□□ -0
SKA1-202ENST00000398452 LHX5Q9H2C1 402 aa15.05■□□□□ -0
SKA1-202ENST00000398452 DPEP3Q9H4B8 488 aa15.05■□□□□ -0
SKA1-202ENST00000398452 INTUQ9ULD6 942 aa15.05■□□□□ -0
SKA1-202ENST00000398452 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.05■□□□□ -0
SKA1-202ENST00000398452 FNDC1Q4ZHG4 1894 aaPredicted RBP15.05■□□□□ -0
SKA1-202ENST00000398452 TMEM265A0A087WTH1 108 aa15.04■□□□□ -0
SKA1-202ENST00000398452 CALCAP01258 141 aa15.04■□□□□ -0
SKA1-202ENST00000398452 FTLP02792 175 aaPredicted RBP15.04■□□□□ -0
SKA1-202ENST00000398452 CALB1P05937 261 aa15.04■□□□□ -0
SKA1-202ENST00000398452 FAM200BP0CF97 657 aa15.04■□□□□ -0
SKA1-202ENST00000398452 MYBL1P10243 752 aa15.04■□□□□ -0
SKA1-202ENST00000398452 CPB1P15086 417 aa15.04■□□□□ -0
SKA1-202ENST00000398452 MYOGP15173 224 aa15.04■□□□□ -0
SKA1-202ENST00000398452 SSTR3P32745 418 aaPredicted RBP15.04■□□□□ -0
SKA1-202ENST00000398452 GLUD2P49448 558 aa15.04■□□□□ -0
SKA1-202ENST00000398452 SMARCB1Q12824 385 aa15.04■□□□□ -0
SKA1-202ENST00000398452 IFI16Q16666 785 aaKnown RBP15.04■□□□□ -0
SKA1-202ENST00000398452 PPP1R26Q5T8A7 1209 aaPredicted RBP15.04■□□□□ -0
SKA1-202ENST00000398452 RASIP1Q5U651 963 aa15.04■□□□□ -0
SKA1-202ENST00000398452 NAA35Q5VZE5 725 aa15.04■□□□□ -0
SKA1-202ENST00000398452 DDX53Q86TM3 631 aaKnown RBP15.04■□□□□ -0
SKA1-202ENST00000398452 ERICH1Q86X53 443 aa15.04■□□□□ -0
SKA1-202ENST00000398452 C12orf29Q8N999 325 aa15.04■□□□□ -0
SKA1-202ENST00000398452 SLC30A5Q8TAD4 765 aa15.04■□□□□ -0
SKA1-202ENST00000398452 MYCBPAPQ8TBZ2 947 aa15.04■□□□□ -0
SKA1-202ENST00000398452 SLC2A14Q8TDB8 520 aa15.04■□□□□ -0
SKA1-202ENST00000398452 RIN2Q8WYP3 895 aaPredicted RBP15.04■□□□□ -0
SKA1-202ENST00000398452 TFAP2BQ92481 460 aa15.04■□□□□ -0
SKA1-202ENST00000398452 SAMD11Q96NU1 681 aa15.04■□□□□ -0
SKA1-202ENST00000398452 HERC2P3Q9BVR0 1158 aa15.04■□□□□ -0
SKA1-202ENST00000398452 PLVAPQ9BX97 442 aa15.04■□□□□ -0
SKA1-202ENST00000398452 COL25A1Q9BXS0 654 aaPredicted RBP15.04■□□□□ -0
SKA1-202ENST00000398452 ANKRD62A6NC57 917 aa15.03■□□□□ -0
SKA1-202ENST00000398452 FGF18O76093 207 aa15.03■□□□□ -0
SKA1-202ENST00000398452 CYP1A1P04798 512 aaPredicted RBP15.03■□□□□ -0
SKA1-202ENST00000398452 CCDC130P13994 396 aa15.03■□□□□ -0
SKA1-202ENST00000398452 ABCB4P21439 1286 aa15.03■□□□□ -0
SKA1-202ENST00000398452 IGFBP4P22692 258 aa15.03■□□□□ -0
SKA1-202ENST00000398452 ARPP19P56211 112 aa15.03■□□□□ -0
SKA1-202ENST00000398452 CENPCQ03188 943 aa15.03■□□□□ -0
SKA1-202ENST00000398452 BST2Q10589 180 aaKnown RBP15.03■□□□□ -0
SKA1-202ENST00000398452 MMRN1Q13201 1228 aa15.03■□□□□ -0
SKA1-202ENST00000398452 RAB30Q15771 203 aa15.03■□□□□ -0
SKA1-202ENST00000398452 CCDC85BQ15834 202 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms