RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 H3BQV1 296 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 NOL4O94818 638 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 TOP3BO95985 862 aaKnown RBP17.35■□□□□ 0.37
CUX2-202ENST00000397643 SPINK2P20155 84 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 SH3PXD2AQ5TCZ1 1133 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 PMS2CLQ68D20 193 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 CC2D1AQ6P1N0 951 aaPredicted RBP17.35■□□□□ 0.37
CUX2-202ENST00000397643 GPBP1Q86WP2 473 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 CPA6Q8N4T0 437 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 OSCP1Q8WVF1 389 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 MRPS31Q92665 395 aaKnown RBP17.35■□□□□ 0.37
CUX2-202ENST00000397643 CD101Q93033 1021 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 ACDQ96AP0 544 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 PKMYT1Q99640 499 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 PARVGQ9HBI0 331 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 BLOC1S4Q9NUP1 217 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 DPP3Q9NY33 737 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 PCDHB5Q9Y5E4 795 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 STYXL1Q9Y6J8 313 aa17.35■□□□□ 0.37
CUX2-202ENST00000397643 FASNP49327 2511 aaKnown RBP17.35■□□□□ 0.37
CUX2-202ENST00000397643 ANTXRLA6NF34 631 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 CDX4O14627 284 aaPredicted RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 TRAK2O60296 914 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 CSH1P0DML2 217 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 CSH2P0DML3 217 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 PDIA4P13667 645 aaKnown RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 HOXB3P14651 431 aaPredicted RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 PTPRDP23468 1912 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 GTF2BQ00403 316 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 FAM160A1Q05DH4 1040 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 FOXC1Q12948 553 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 EML3Q32P44 896 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 CRELD2Q6UXH1 353 aaPredicted RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 DCP1BQ8IZD4 617 aaKnown RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 ASCC3Q8N3C0 2202 aaKnown RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 MYCT1Q8N699 235 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 LEO1Q8WVC0 666 aaPredicted RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 TRMT2BQ96GJ1 504 aaKnown RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 CDK5RAP3Q96JB5 506 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 PI4K2AQ9BTU6 479 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 ANAPC1Q9H1A4 1944 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 IKZF4Q9H2S9 585 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 MAGED2Q9UNF1 606 aaPredicted RBP17.34■□□□□ 0.37
CUX2-202ENST00000397643 WNT6Q9Y6F9 365 aa17.34■□□□□ 0.37
CUX2-202ENST00000397643 CACNA1EQ15878 2313 aa17.33■□□□□ 0.37
CUX2-202ENST00000397643 THADAQ6YHU6 1953 aa17.33■□□□□ 0.37
CUX2-202ENST00000397643 KPNA7A9QM74 516 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 PATE3B3GLJ2 98 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 PRPF40AO75400 957 aaKnown RBP17.33■□□□□ 0.36
CUX2-202ENST00000397643 FAM13AO94988 1023 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 BCKDHBP21953 392 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 DGKEP52429 567 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 DDR2Q16832 855 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 CCDC142Q17RM4 750 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 RILPL1Q5EBL4 403 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 DAB2IPQ5VWQ8 1189 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 RASSF3Q86WH2 238 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 GATA6Q92908 595 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 MYRFLQ96LU7 910 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 IPO9Q96P70 1041 aaKnown RBP17.33■□□□□ 0.36
CUX2-202ENST00000397643 CYP2S1Q96SQ9 504 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 ADAM33Q9BZ11 813 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 DUS2Q9NX74 493 aaKnown RBP17.33■□□□□ 0.36
CUX2-202ENST00000397643 GCNT4Q9P109 453 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 INVSQ9Y283 1065 aa17.33■□□□□ 0.36
CUX2-202ENST00000397643 CSRP1P21291 193 aaKnown RBP17.32■□□□□ 0.36
CUX2-202ENST00000397643 SYT1P21579 422 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 CYP2F1P24903 491 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 GBP1P32455 592 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 WNT7BP56706 349 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 COL9A2Q14055 689 aaPredicted RBP17.32■□□□□ 0.36
CUX2-202ENST00000397643 NFE2Q16621 373 aaPredicted RBP17.32■□□□□ 0.36
CUX2-202ENST00000397643 GAB4Q2WGN9 574 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 SV2CQ496J9 727 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 ZC2HC1CQ53FD0 456 aaPredicted RBP17.32■□□□□ 0.36
CUX2-202ENST00000397643 ARL6IP4Q66PJ3 421 aaKnown RBP17.32■□□□□ 0.36
CUX2-202ENST00000397643 SCARA3Q6AZY7 606 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 ADALQ6DHV7 355 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 PDCL2Q8N4E4 241 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 TSTD1Q8NFU3 115 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 USP33Q8TEY7 942 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 ATP2A3Q93084 1043 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 EXOC4Q96A65 974 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 TPSD1Q9BZJ3 242 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 TMEM206Q9H813 350 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 ABCB6Q9NP58 842 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 TMEM9BQ9NQ34 198 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 L1RE1Q9UN81 338 aa17.32■□□□□ 0.36
CUX2-202ENST00000397643 HELZP42694 1942 aaKnown RBP17.31■□□□□ 0.36
CUX2-202ENST00000397643 SLC26A4O43511 780 aa17.31■□□□□ 0.36
CUX2-202ENST00000397643 CHRM1P11229 460 aaPredicted RBP17.31■□□□□ 0.36
CUX2-202ENST00000397643 CEACAM1P13688 526 aa17.31■□□□□ 0.36
CUX2-202ENST00000397643 ADSSP30520 456 aa17.31■□□□□ 0.36
CUX2-202ENST00000397643 OPRD1P41143 372 aa17.31■□□□□ 0.36
CUX2-202ENST00000397643 IFNAR2P48551 515 aa17.31■□□□□ 0.36
CUX2-202ENST00000397643 TSPY1Q01534 308 aa17.31■□□□□ 0.36
CUX2-202ENST00000397643 POU5F1Q01860 360 aaKnown RBP17.31■□□□□ 0.36
CUX2-202ENST00000397643 DHX8Q14562 1220 aaKnown RBP17.31■□□□□ 0.36
CUX2-202ENST00000397643 CXorf38Q8TB03 319 aa17.31■□□□□ 0.36
CUX2-202ENST00000397643 CNOT6LQ96LI5 555 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms