RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CHKBQ9Y259 395 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 R3HDM2Q9Y2K5 976 aaKnown RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 BIVM-ERCC5R4GMW8 1640 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 MYMKA6NI61 221 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 SEL1L3Q68CR1 1132 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 PPP1R18Q6NYC8 613 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 RMDN3Q96TC7 470 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 MRPL4Q9BYD3 311 aaKnown RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 MYLK2Q9H1R3 596 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 EHD4Q9H223 541 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 PLEKHA5Q9HAU0 1116 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TOPORSQ9NS56 1045 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TRIM43BA6NCK2 446 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 HIST1H2AGP0C0S8 130 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 HIST1H2ADP20671 130 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TALDO1P37837 337 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 RGS7P49802 495 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 ERFEQ4G0M1 354 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 PCNX4Q63HM2 1172 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 GJB7Q6PEY0 223 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 HIST1H2AHQ96KK5 128 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 HIST1H2AJQ99878 128 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 H2AFJQ9BTM1 129 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 THAP2Q9H0W7 228 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TBC1D22BQ9NU19 505 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 KLHL3Q9UH77 587 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 ADAM30Q9UKF2 790 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 NCKAP1LP55160 1127 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 KLHL12Q53G59 568 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 ELMSAN1Q6PJG2 1045 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 ANKS3Q6ZW76 656 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 SGMS1Q86VZ5 419 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 FBXO25Q8TCJ0 367 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 SYN2Q92777 582 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 GABBR1Q9UBS5 961 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 GOLGA8TH3BQL2 631 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 EYA4O95677 639 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 SERPIND1P05546 499 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 MYBP10242 640 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 SWSAP1Q6NVH7 229 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 MIGA2Q7L4E1 593 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 SNX31Q8N9S9 440 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 FBXO36Q8NEA4 188 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 NUP153P49790 1475 aaKnown RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 H2AFYO75367 372 aaKnown RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 EIF2S1P05198 315 aaKnown RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 APOA4P06727 396 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 PGK2P07205 417 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 CCDC130P13994 396 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 HERVK_113P62684 666 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 SFSWAPQ12872 951 aaKnown RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ACAP1Q15027 740 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 UTS2BQ765I0 119 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 KBTBD2Q8IY47 623 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 KRT35Q92764 455 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ACSF2Q96CM8 615 aaPredicted RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 EURLQ9NYK6 297 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 NR5A2O00482 541 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 FAM20BO75063 409 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 PHKA2P46019 1235 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ZNF57Q68EA5 555 aaPredicted RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 OR6Y1Q8NGX8 325 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 CYP39A1Q9NYL5 469 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 HMGXB3Q12766 1538 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 FAM196BA6NMK8 535 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 GRAP2O75791 330 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 FASP25445 335 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 NFYCQ13952 458 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ADGRF4Q8IZF3 695 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 SRBD1Q8N5C6 995 aaKnown RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 SLC44A5Q8NCS7 719 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 MAGED4Q96JG8 741 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 C1orf50Q9BV19 199 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 LATS2Q9NRM7 1088 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 RUVBL2Q9Y230 463 aaKnown RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 CLOCKO15516 846 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 CBX6O95503 412 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 POU1F1P28069 291 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 CCNA1P78396 465 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 EPHA10Q5JZY3 1008 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 OTUD3Q5T2D3 398 aaPredicted RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 FAXCQ5TGI0 409 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 KLHDC7AQ5VTJ3 777 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 USPL1Q5W0Q7 1092 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 C1orf131Q8NDD1 294 aaKnown RBP12.29□□□□□ -0.44
SYNPO-202ENST00000394243 APPL2Q8NEU8 664 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ERGIC2Q96RQ1 377 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 RRN3Q9NYV6 651 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 MBD2Q9UBB5 411 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 FCGR1AP12314 374 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ATP12AP54707 1039 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 SPANXN2Q5MJ10 180 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ZSWIM1Q9BR11 485 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 RSAD1Q9HA92 442 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 WDR35Q9P2L0 1181 aa12.29□□□□□ -0.44
SYNPO-202ENST00000394243 ADCY6O43306 1168 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PDE9AO76083 593 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PIK3R1P27986 724 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 CDK17Q00537 523 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 NFX1Q12986 1120 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms