RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NAP1L3Q99457 506 aaPredicted RBP19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 OSBPL7Q9BZF2 842 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 RNF19AQ9NV58 838 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 VPS18Q9P253 973 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 DSEQ9UL01 958 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 TANC1Q9C0D5 1861 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 TMEM110-MUSTN1A8MSY1 372 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 SPTLC1O15269 473 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 OPA1O60313 960 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 ODC1P11926 461 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 ACOT1Q86TX2 421 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 METTL23Q86XA0 190 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 MREGQ8N565 214 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 C3orf20Q8ND61 904 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 FEZF2Q8TBJ5 459 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 MS4A14Q96JA4 679 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 SENP8Q96LD8 212 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 CARD9Q9H257 536 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 HIPK3Q9H422 1215 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 IP6K2Q9UHH9 426 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 TSPAN16Q9UKR8 245 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 INPP5FQ9Y2H2 1132 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 GOLGA6BA6NDN3 693 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 POMCP01189 267 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 MYBL2P10244 700 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 IBSPP21815 317 aaPredicted RBP19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 SSTR3P32745 418 aaPredicted RBP19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 MAN1A1P33908 653 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 CLCNKBP51801 687 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 GSCP56915 257 aaPredicted RBP19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 PTP4A2Q12974 167 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 ORC1Q13415 861 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 MAMLD1Q13495 774 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 ZNF268Q14587 947 aaPredicted RBP19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 UPP1Q16831 310 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 GOLGA7BQ2TAP0 167 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 DCUN1D2Q6PH85 259 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 DCLRE1AQ6PJP8 1040 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 ABI1Q8IZP0 508 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 KBTBD7Q8WVZ9 684 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 SLITRK6Q9H5Y7 841 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 LRFN2Q9ULH4 789 aa19.22■□□□□ 0.67
CCDC88C-203ENST00000389856 ZMYND10O75800 440 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 HSPA8P11142 646 aaKnown RBP19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 DNA2P51530 1060 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 CUL1Q13616 776 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 NOMO2Q5JPE7 1267 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 SND1Q7KZF4 910 aaKnown RBP eCLIP19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 STK32AQ8WU08 396 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 HDAC7Q8WUI4 952 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 FAM193BQ96PV7 902 aaPredicted RBP19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 MIOSQ9NXC5 875 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 PACSIN2Q9UNF0 486 aaPredicted RBP19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 FAN1Q9Y2M0 1017 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 PCDHB7Q9Y5E2 793 aa19.21■□□□□ 0.67
CCDC88C-203ENST00000389856 CASTOR2A6NHX0 329 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 GOLGA8KD6RF30 607 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 CEP104O60308 925 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 PROSCO94903 275 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 HEXIM1O94992 359 aaKnown RBP19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 SYF2O95926 243 aaKnown RBP19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 DESP17661 470 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 COMTP21964 271 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 CTNNA2P26232 953 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 PCSK1P29120 753 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 RFC2P35250 354 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 GPD2P43304 727 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 GJA8P48165 433 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 CTCFP49711 727 aaPredicted RBP19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 ATN1P54259 1190 aaPredicted RBP19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 BCAT1P54687 386 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 PSMC1P62191 440 aaKnown RBP19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 PDCLQ13371 301 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 WDTC1Q8N5D0 677 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 CYLDQ9NQC7 956 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 EHD2Q9NZN4 543 aa19.2■□□□□ 0.66
CCDC88C-203ENST00000389856 FAM170AA1A519 330 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 NBNO60934 754 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 RNF40O75150 1001 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 GABRB2P47870 512 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 RNASELQ05823 741 aaKnown RBP19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 RTN4RL1Q86UN2 441 aaPredicted RBP19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 ZDHHC17Q8IUH5 632 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 DBF4BQ8NFT6 615 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 KRT12Q99456 494 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 GOLPH3Q9H4A6 298 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 SMARCAL1Q9NZC9 954 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 CALCOCO1Q9P1Z2 691 aa19.19■□□□□ 0.66
CCDC88C-203ENST00000389856 GABRDO14764 452 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 HSF2BPO75031 334 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 B3GAT3O94766 335 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 PDGFRBP09619 1106 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 CTNNA1P35221 906 aaKnown RBP19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 TLE2Q04725 743 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 BST2Q10589 180 aaKnown RBP19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 PIGHQ14442 188 aaPredicted RBP19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 TRIM60Q495X7 471 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 PTPN20Q4JDL3 420 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms