RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 FAM155BO75949 473 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 TJP3O95049 919 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 MYL2P10916 166 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 ARL4CP56559 192 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 EN1Q05925 392 aaPredicted RBP19.38■□□□□ 0.69
CCDC3-201ENST00000378825 SPDYE2Q495Y8 402 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 CYP4A22Q5TCH4 519 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 TRIM11Q96F44 468 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 IWS1Q96ST2 819 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 HAPLN2Q9GZV7 340 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 KCNG1Q9UIX4 513 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 CHMP2BQ9UQN3 213 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 LRCH1Q9Y2L9 728 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 NUB1Q9Y5A7 615 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 ZNF862O60290 1169 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 DLDP09622 509 aaKnown RBP19.38■□□□□ 0.69
CCDC3-201ENST00000378825 ZCCHC18P0CG32 403 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 CAP2P40123 477 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 HSD17B4P51659 736 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 SLC34A1Q06495 639 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 CMPK2Q5EBM0 449 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 IRGCQ6NXR0 463 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 RCOR2Q8IZ40 523 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 CLEC4DQ8WXI8 215 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 FOXP3Q9BZS1 431 aa19.38■□□□□ 0.69
CCDC3-201ENST00000378825 MRPL47Q9HD33 250 aaKnown RBP19.38■□□□□ 0.69
CCDC3-201ENST00000378825 FARP1Q9Y4F1 1045 aaPredicted RBP19.38■□□□□ 0.69
CCDC3-201ENST00000378825 CALRP27797 417 aaKnown RBP19.37■□□□□ 0.69
CCDC3-201ENST00000378825 CACNA2D1P54289 1103 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 ZACNQ401N2 412 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 HSF5Q4G112 596 aaPredicted RBP19.37■□□□□ 0.69
CCDC3-201ENST00000378825 WDR44Q5JSH3 913 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 CES4AQ5XG92 561 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 ADGRD1Q6QNK2 874 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 CDHR3Q6ZTQ4 885 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 TREML1Q86YW5 311 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 PDCD7Q8N8D1 485 aaKnown RBP19.37■□□□□ 0.69
CCDC3-201ENST00000378825 GMLQ99445 158 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 TJP2Q9UDY2 1190 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 UBIAD1Q9Y5Z9 338 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 TMEM191CA6NGB0 347 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 FCHO1O14526 889 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 C4BPAP04003 597 aaKnown RBP19.37■□□□□ 0.69
CCDC3-201ENST00000378825 CD48P09326 243 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 TMEM191BP0C7N4 346 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 ESRRAP11474 423 aaPredicted RBP19.37■□□□□ 0.69
CCDC3-201ENST00000378825 CDKN2BP42772 138 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 LMNB2Q03252 620 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 CUL2Q13617 745 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 C4orf19Q8IY42 314 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 ACTL9Q8TC94 416 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 CEP170P1Q96L14 293 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 ZWILCHQ9H900 591 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 WDR35Q9P2L0 1181 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 SHOC2Q9UQ13 582 aa19.37■□□□□ 0.69
CCDC3-201ENST00000378825 COL4A5P29400 1685 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 TESPA1A2RU30 521 aaPredicted RBP19.36■□□□□ 0.69
CCDC3-201ENST00000378825 USP1O94782 785 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 CDK16Q00536 496 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 OTUD4Q01804 1114 aaKnown RBP19.36■□□□□ 0.69
CCDC3-201ENST00000378825 SLC25A41Q8N5S1 370 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 OR5B17Q8NGF7 314 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 FAM161BQ96MY7 647 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 FNBP1Q96RU3 617 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 ZNRF3Q9ULT6 936 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 H3BRJ5 948 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 LPXNO60711 386 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 PYGBP11216 843 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 MCCD1P59942 119 aaPredicted RBP19.36■□□□□ 0.69
CCDC3-201ENST00000378825 FAAP100Q0VG06 881 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 RBBP5Q15291 538 aaKnown RBP19.36■□□□□ 0.69
CCDC3-201ENST00000378825 ENOSF1Q7L5Y1 443 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 PHF13Q86YI8 300 aaPredicted RBP19.36■□□□□ 0.69
CCDC3-201ENST00000378825 RBM41Q96IZ5 413 aaKnown RBP19.36■□□□□ 0.69
CCDC3-201ENST00000378825 RAVER2Q9HCJ3 691 aaKnown RBP19.36■□□□□ 0.69
CCDC3-201ENST00000378825 PARVAQ9NVD7 372 aa19.36■□□□□ 0.69
CCDC3-201ENST00000378825 AVILO75366 819 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 LYPLA2O95372 231 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 ENO1P06733 434 aaKnown RBP19.35■□□□□ 0.69
CCDC3-201ENST00000378825 HMGB2P26583 209 aaKnown RBP19.35■□□□□ 0.69
CCDC3-201ENST00000378825 GTF2H1P32780 548 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 RPL22P35268 128 aaKnown RBP19.35■□□□□ 0.69
CCDC3-201ENST00000378825 OCRLQ01968 901 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 MTMR2Q13614 643 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 ZNF677Q86XU0 584 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 UNC45BQ8IWX7 931 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 GALNT15Q8N3T1 639 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 SH3TC2Q8TF17 1288 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 ZNF606Q8WXB4 792 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 ACSS3Q9H6R3 686 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 PCDH9Q9HC56 1237 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 MARCOQ9UEW3 520 aaPredicted RBP19.35■□□□□ 0.69
CCDC3-201ENST00000378825 IP6K2Q9UHH9 426 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 TCEAL9Q9UHQ7 104 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 SCOCQ9UIL1 159 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 ATP2A1O14983 1001 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 LMNAP02545 664 aaKnown RBP19.35■□□□□ 0.69
CCDC3-201ENST00000378825 BRD2P25440 801 aaKnown RBP19.35■□□□□ 0.69
CCDC3-201ENST00000378825 PGM1P36871 562 aa19.35■□□□□ 0.69
CCDC3-201ENST00000378825 SNRPFP62306 86 aaKnown RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms