RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ZNF132P52740 706 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 C4orf50Q6ZRC1 276 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 FUKQ8N0W3 1084 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 SLC2A14Q8TDB8 520 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 C2orf15Q8WU43 125 aaKnown RBP23.56■■□□□ 1.36
SHMT1-203ENST00000354098 SEPT5Q99719 369 aaPredicted RBP23.56■■□□□ 1.36
SHMT1-203ENST00000354098 ZNF518BQ9C0D4 1074 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 ACP6Q9NPH0 428 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 PRDM6Q9NQX0 595 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 MAFFQ9ULX9 164 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 PRUNE2Q8WUY3 3088 aa23.56■■□□□ 1.36
SHMT1-203ENST00000354098 COL6A3P12111 3177 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 SPDYE4A6NLX3 237 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 ZMYND10O75800 440 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 SRGAP2BP0DMP2 458 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 BDNFP23560 247 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 MGAT5BQ3V5L5 792 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 CFAP221Q4G0U5 840 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 CCDC149Q6ZUS6 474 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 CYFIP2Q96F07 1278 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 STK33Q9BYT3 514 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 UBE2ZQ9H832 354 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-203ENST00000354098 DZANK1Q9NVP4 752 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 DPP7Q9UHL4 492 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 INSL5Q9Y5Q6 135 aa23.55■■□□□ 1.36
SHMT1-203ENST00000354098 H3BQ06 376 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-203ENST00000354098 HAPLN1P10915 354 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-203ENST00000354098 RFX1P22670 979 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 GPR15P49685 360 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 CACNA2D1P54289 1103 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 CLUL1Q15846 466 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 UVSSAQ2YD98 709 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 PPM1LQ5SGD2 360 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 PPP1R26Q5T8A7 1209 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-203ENST00000354098 FUBP3Q96I24 572 aaKnown RBP eCLIP23.54■■□□□ 1.36
SHMT1-203ENST00000354098 MSLNLQ96KJ4 702 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 MED10Q9BTT4 135 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 TMEM30AQ9NV96 361 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 YIPF1Q9Y548 306 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 MTCL1Q9Y4B5 1905 aaKnown RBP23.54■■□□□ 1.36
SHMT1-203ENST00000354098 CCDC195A0A1B0GUA6 201 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 CD19P15391 556 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 KCNA5P22460 613 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 ADORA2BP29275 332 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 RARS2Q5T160 578 aaKnown RBP23.54■■□□□ 1.36
SHMT1-203ENST00000354098 SARM1Q6SZW1 724 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 TMC5Q6UXY8 1006 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 TFAP2BQ92481 460 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 HLA-CQ95604 372 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 ZSWIM1Q9BR11 485 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 ABCB6Q9NP58 842 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 HSFX1Q9UBD0 423 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 CDH22Q9UJ99 828 aa23.54■■□□□ 1.36
SHMT1-203ENST00000354098 CCL16O15467 120 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 CYP26A1O43174 497 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 CBFA2T2O43439 604 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 PAEPP09466 180 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 TWF1Q12792 350 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 DDR2Q16832 855 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 SDHAF4Q5VUM1 108 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 FAM35AQ86V20 835 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 FAM71AQ8IYT1 594 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 HNRNPABQ99729 332 aaKnown RBP23.53■■□□□ 1.36
SHMT1-203ENST00000354098 S1PR5Q9H228 398 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 SFXN1Q9H9B4 322 aa23.53■■□□□ 1.36
SHMT1-203ENST00000354098 F8VZ95 297 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 ATF6P18850 670 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 TRIM21P19474 475 aaKnown RBP23.52■■□□□ 1.36
SHMT1-203ENST00000354098 CLCN1P35523 988 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 TUFMP49411 452 aaKnown RBP23.52■■□□□ 1.36
SHMT1-203ENST00000354098 JAM2P57087 298 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 ELMSAN1Q6PJG2 1045 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 GPIHBP1Q8IV16 184 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 SCN4BQ8IWT1 228 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 GPR152Q8TDT2 470 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 ZNF707Q96C28 371 aaPredicted RBP23.52■■□□□ 1.36
SHMT1-203ENST00000354098 TRIM5Q9C035 493 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 DNAI2Q9GZS0 605 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 ZDHHC7Q9NXF8 308 aa23.52■■□□□ 1.36
SHMT1-203ENST00000354098 TPM3P06753 285 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 VDRP11473 427 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 HOXB8P17481 243 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-203ENST00000354098 BRD2P25440 801 aaKnown RBP23.51■■□□□ 1.35
SHMT1-203ENST00000354098 SGO2Q562F6 1265 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 STKLD1Q8NE28 680 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 KCNK16Q96T55 309 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 PRKD2Q9BZL6 878 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 CEP72Q9P209 647 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 BEST1O76090 585 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 LRG1P02750 347 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 SSTR3P32745 418 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-203ENST00000354098 GRIK1P39086 918 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 MAGEA11P43364 429 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 ALDH1A3P47895 512 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 ARHGAP17Q68EM7 881 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 RTL10Q7L3V2 364 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 CACNA2D4Q7Z3S7 1137 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 GIPC2Q8TF65 315 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 SPAG5Q96R06 1193 aa23.51■■□□□ 1.35
SHMT1-203ENST00000354098 TTYH3Q9C0H2 523 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms