RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CDK4P11802 303 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 GTF2H1P32780 548 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 HIRAP54198 1017 aaPredicted RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 ARHGAP8P85298 464 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 ASPHQ12797 758 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 ALCAMQ13740 583 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 PDK3Q15120 406 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 OASLQ15646 514 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 HIF1AQ16665 826 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 TBC1D10BQ4KMP7 808 aaPredicted RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 MFSD7Q6UXD7 560 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 ISLR2Q6UXK2 745 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 KYAT3Q6YP21 454 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 RBM44Q6ZP01 1051 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 CDHR3Q6ZTQ4 885 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 C3orf62Q6ZUJ4 267 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 MON1BQ7L1V2 547 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 PRPF39Q86UA1 669 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 METTL25Q8N6Q8 603 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 XXYLT1Q8NBI6 393 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS39-202ENST00000348544 APOPT1Q96IL0 206 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 TMEM121Q9BTD3 319 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 MECRQ9BV79 373 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 CCDC106Q9BWC9 280 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 C10orf88Q9H8K7 445 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 C17orf75Q9HAS0 396 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 CD209Q9NNX6 404 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 SRP68Q9UHB9 627 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 PCDHGB4Q9UN71 923 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 PCDHGB5Q9Y5G0 923 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 COL5A3P25940 1745 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 C15orf38-AP3S2A0A0A6YYH1 394 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 SPECC1L-ADORA2AF8WAN1 911 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 C6orf229H3BNL8 230 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 FKBP6O75344 327 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 TFAP2AP05549 437 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 EEF2P13639 858 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 KRT5P13647 590 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ATF7P17544 494 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 DESP17661 470 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ZNF76P36508 570 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 RGS2P41220 211 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 GPC3P51654 580 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 EMP3P54852 163 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 CCNIQ14094 377 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 UBAP2LQ14157 1087 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 MFSD14BQ5SR56 506 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 C6orf163Q5TEZ5 329 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 DRICH1Q6PGQ1 229 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 CCDC174Q6PII3 467 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ARPINQ7Z6K5 226 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 C12orf56Q8IXR9 622 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 KCTD17Q8N5Z5 321 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ZNF513Q8N8E2 541 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 ATP11CQ8NB49 1132 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 LINC00116Q8NCU8 138 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 FBXO36Q8NEA4 188 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 GDPD5Q8WTR4 605 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 PYROXD1Q8WU10 500 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 MKL1Q969V6 931 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 CCDC127Q96BQ5 260 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ALKBH8Q96BT7 664 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 DGCR14Q96DF8 476 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 SLITRK1Q96PX8 696 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 PI4K2AQ9BTU6 479 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 RBM38Q9H0Z9 239 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 DDX18Q9NVP1 670 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 KCNK4Q9NYG8 393 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 CIDEBQ9UHD4 219 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 SERPINB13Q9UIV8 391 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 SMCHD1A6NHR9 2005 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 TCRBV7S3A2A0A539 114 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 AP1G1O43747 822 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 IFNB1P01574 187 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 MT-ND3P03897 115 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 SETSIPP0DME0 302 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 YY1P25490 414 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 SSTR3P32745 418 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 CHN2P52757 468 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ALDH18A1P54886 795 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 VCPP55072 806 aaKnown RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 SH3BGRP55822 239 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 SLC25A3Q00325 362 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 SLC18A2Q05940 514 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 FAAP100Q0VG06 881 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 BST1Q10588 318 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 MAMLD1Q13495 774 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ITGA9Q13797 1035 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 DNAL1Q4LDG9 190 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ANKRD20A4Q4UJ75 823 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 AAGABQ6PD74 315 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 KLHDC10Q6PID8 442 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 RHPN2Q8IUC4 686 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 IGDCC3Q8IVU1 814 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ARID3BQ8IVW6 561 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 TAB3Q8N5C8 712 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 MIPOL1Q8TD10 442 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 TMEM174Q8WUU8 243 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 POMGNT1Q8WZA1 660 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms