RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 TMEM40Q8WWA1 233 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 TFAP2BQ92481 460 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 TRIB2Q92519 343 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 ZBTB9Q96C00 473 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 KLF16Q9BXK1 252 aaPredicted RBP9.8□□□□□ -0.84
ATG4A-202ENST00000345734 PRKD2Q9BZL6 878 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 SDCBP2Q9H190 292 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 ASB7Q9H672 318 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 SMYD3Q9H7B4 428 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 RNF19AQ9NV58 838 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 SNTG2Q9NY99 539 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 L1RE1Q9UN81 338 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 Q9Y3F1 56 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 HES2Q9Y543 173 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 SCN10AQ9Y5Y9 1956 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 CDK2AP1O14519 115 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 FGGP02679 453 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 GLI1P08151 1106 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 C6orf222P0C671 652 aaPredicted RBP9.8□□□□□ -0.84
ATG4A-202ENST00000345734 PLA2G4AP47712 749 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 FLT3LGP49771 235 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 FCGRTP55899 365 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 ORC1Q13415 861 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 TERF2Q15554 542 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 KYAT1Q16773 422 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 ZNF667Q5HYK9 610 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 CCNI2Q6ZMN8 369 aaPredicted RBP9.8□□□□□ -0.84
ATG4A-202ENST00000345734 TRIM72Q6ZMU5 477 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 MMS22LQ6ZRQ5 1243 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 ZNF598Q86UK7 904 aaKnown RBP9.8□□□□□ -0.84
ATG4A-202ENST00000345734 CD101Q93033 1021 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 RPS6KC1Q96S38 1066 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 AVENQ9NQS1 362 aaPredicted RBP9.8□□□□□ -0.84
ATG4A-202ENST00000345734 ADAM22Q9P0K1 906 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 ANAPC7Q9UJX3 599 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 NR2E1Q9Y466 385 aa9.8□□□□□ -0.84
ATG4A-202ENST00000345734 PDCD11Q14690 1871 aaKnown RBP9.8□□□□□ -0.84
ATG4A-202ENST00000345734 C17orf102A2RUQ5 167 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 ZSCAN5CA6NGD5 496 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 KRIT1O00522 736 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 RAD51CO43502 376 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 AOC2O75106 756 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 DUSP11O75319 330 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 GJB6O95452 261 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 PGK1P00558 417 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 CYBAP13498 195 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 MCM3P25205 808 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 PTGIRP43119 386 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 PEX5P50542 639 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 LACTBP83111 547 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 CDC42EP1Q00587 391 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 POU5F1Q01860 360 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 PTP4A2Q12974 167 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 SNX17Q15036 470 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 DCAF4L1Q3SXM0 396 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 Q6ZVU0 165 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 ADAT2Q7Z6V5 191 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 PHF13Q86YI8 300 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 RNPC3Q96LT9 517 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 GDAP1L1Q96MZ0 367 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 ZMAT2Q96NC0 199 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 BCO2Q9BYV7 579 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 CARD9Q9H257 536 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 DPP3Q9NY33 737 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 HMGXB4Q9UGU5 601 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 AGAP1Q9UPQ3 857 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 ESYT3A0FGR9 886 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 MAP2K7O14733 419 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 GPR182O15218 404 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 ATP8B1O43520 1251 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 SPOPO43791 374 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 MYBL1P10243 752 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 TIMP2P16035 220 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 EIF4BP23588 611 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 TNNC1P63316 161 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 PRKCZQ05513 592 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 GLE1Q53GS7 698 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 GNASQ5JWF2 1037 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 ICE2Q659A1 982 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 NOTUMQ6P988 496 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 SLC27A1Q6PCB7 646 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 FAM43BQ6ZT52 329 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 ZNF295-AS1Q8N0V1 137 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 UBL4BQ8N7F7 174 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 C7orf31Q8N865 590 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 C1orf131Q8NDD1 294 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 WHAMMQ8TF30 809 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 HPDLQ96IR7 371 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 TWNKQ96RR1 684 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 KATNAL1Q9BW62 490 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 PHACTR1Q9C0D0 580 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 DDX47Q9H0S4 455 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 NXF3Q9H4D5 531 aaKnown RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 TTC7AQ9ULT0 858 aaPredicted RBP9.79□□□□□ -0.84
ATG4A-202ENST00000345734 C2CD2Q9Y426 696 aa9.79□□□□□ -0.84
ATG4A-202ENST00000345734 MIF4GDA9UHW6 222 aaKnown RBP9.78□□□□□ -0.84
ATG4A-202ENST00000345734 PPEF2O14830 753 aa9.78□□□□□ -0.84
ATG4A-202ENST00000345734 HEXIM1O94992 359 aaKnown RBP9.78□□□□□ -0.84
ATG4A-202ENST00000345734 AKAP5P24588 427 aa9.78□□□□□ -0.84
ATG4A-202ENST00000345734 HOXC8P31273 242 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms