RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 NLRP4Q96MN2 994 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ARHGEF3Q9NR81 526 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 NINJ2Q9NZG7 142 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ZMYM2Q9UBW7 1377 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 NCANO14594 1321 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 MEGF6O75095 1541 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 TRPC5OSA6NMA1 111 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 PROSCO94903 275 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ANPEPP15144 967 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CPA2P48052 419 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 OSTNP61366 133 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 KIF22Q14807 665 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 HGSNATQ68CP4 663 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 IRF2BP2Q7Z5L9 587 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 VGLL2Q8N8G2 317 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 FLAD1Q8NFF5 587 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 WDR60Q8WVS4 1066 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 PPP1R14BQ96C90 147 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 FAM167AQ96KS9 214 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CIDEBQ9UHD4 219 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 MROH7Q68CQ1 1323 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CLASP2O75122 1294 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 GDF11O95390 407 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 FAM200BP0CF97 657 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ALADP13716 330 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 EIF2AK2P19525 551 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 SNAP25P60880 206 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ABCE1P61221 599 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 TBL3Q12788 808 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ZNF568Q3ZCX4 644 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 LPCAT2Q7L5N7 544 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 KRT35Q92764 455 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ZC4H2Q9NQZ6 224 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 IL17RBQ9NRM6 502 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ZNF229Q9UJW7 825 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 GINS2Q9Y248 185 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 NPTXRO95502 500 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 GH2P01242 217 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 MYL4P12829 197 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 SERPINB1P30740 379 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CIITAP33076 1130 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 DCTN2Q13561 401 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CUL2Q13617 745 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 STXBP2Q15833 593 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 AVENQ9NQS1 362 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 KPNA4O00629 521 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 HMOX2P30519 316 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 GCNT1Q02742 428 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 MXD4Q14582 209 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CWF19L1Q69YN2 538 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CCDC117Q8IWD4 279 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CYGBQ8WWM9 190 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 PPP1R36Q96LQ0 422 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 MTMR9Q96QG7 549 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 FAM118BQ9BPY3 351 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 TMEM79Q9BSE2 394 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 PNMA3Q9UL41 463 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 SYNJ2BP-COX16A0A087WUM0 186 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ARHGEF37A1IGU5 675 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 DDX3XO00571 662 aaKnown RBP eCLIP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 KRT8P05787 483 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 SSTR3P32745 418 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 SLC1A6P48664 564 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 CHN2P52757 468 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 POU5F1BQ06416 359 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 C1orf228Q6PIY5 440 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ATP6V1E2Q96A05 226 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 EPS8L2Q9H6S3 715 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ATAD3AQ9NVI7 634 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 KLHL11Q9NVR0 708 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 COX16Q9P0S2 106 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 F8W8V4 182 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 GFAPP14136 432 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 SERPINB5P36952 375 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 EFNA5P52803 228 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 YWHAHQ04917 246 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 EFHC2Q5JST6 749 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 TRPC4APQ8TEL6 797 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 PARD3BQ8TEW8 1205 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 UNC45AQ9H3U1 944 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 G3BP2Q9UN86 482 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 DMTF1Q9Y222 760 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ARHGEF9O43307 516 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 FLT3P36888 993 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 COL9A3Q14050 684 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 PDK2Q15119 407 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 TRIM16LQ309B1 348 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 IYDQ6PHW0 289 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 DEFB107AQ8IZN7 70 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 FITM2Q8N6M3 262 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 RUSC1Q9BVN2 902 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 ANKEF1Q9NU02 776 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 BLOC1S4Q9NUP1 217 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 DDX18Q9NVP1 670 aaKnown RBP4.98□□□□□ -1.61
CSMD3-203ENST00000343508 THAP1Q9NVV9 213 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 NYAP2Q9P242 653 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 GABBR1Q9UBS5 961 aa4.98□□□□□ -1.61
CSMD3-203ENST00000343508 APPL1Q9UKG1 709 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms