RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SPOPO43791 374 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CEP104O60308 925 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CALB1P05937 261 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 HSPA1AP0DMV8 641 aaKnown RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 HSPA1BP0DMV9 641 aaKnown RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 TCF4P15884 667 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 WARSP23381 471 aaKnown RBP4.38□□□□□ -1.71
MCF2-201ENST00000338585 GJA8P48165 433 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 RABGGTBP53611 331 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 PDE4CQ08493 712 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 LRRC26Q2I0M4 334 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 PKDCCQ504Y2 493 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 NOMO2Q5JPE7 1267 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 PPP1R15BQ5SWA1 713 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 PMF1Q6P1K2 205 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 DNAJC24Q6P3W2 148 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 GLB1LQ6UWU2 654 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 DSTYKQ6XUX3 929 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 UNC93AQ86WB7 457 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 XYLT1Q86Y38 959 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CRYBG2Q8N1P7 616 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TTC39CQ8N584 583 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 EMC1Q8N766 993 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 JOSD2Q8TAC2 188 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 FEZF2Q8TBJ5 459 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 SLC2A14Q8TDB8 520 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 UBXN4Q92575 508 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 SEPT8Q92599 483 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 GOLGA1Q92805 767 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 CD101Q93033 1021 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 VWCEQ96DN2 955 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 VCPIP1Q96JH7 1222 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 SEZ6LQ9BYH1 1024 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 UBN1Q9NPG3 1134 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TBC1D13Q9NVG8 400 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 DNAJB4Q9UDY4 337 aa4.38□□□□□ -1.71
MCF2-201ENST00000338585 TMEM191CA6NGB0 347 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 E5RJQ4 531 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 MYO1FO00160 1098 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 GABRDO14764 452 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 INPPL1O15357 1258 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PROSCO94903 275 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 EOMESO95936 686 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RHOXF2BP0C7M4 288 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PTPN1P18031 435 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 ITGB8P26012 769 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RPL9P32969 192 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 RFC1P35251 1148 aaPredicted RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 AARSP49588 968 aaKnown RBP eCLIP4.37□□□□□ -1.71
MCF2-201ENST00000338585 PEX5P50542 639 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TAS2R40P59535 323 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 CKAP4Q07065 602 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 DSC1Q08554 894 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 LLGL1Q15334 1064 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TAF5Q15542 800 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 MDH1BQ5I0G3 518 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 CCDC181Q5TID7 509 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 ARHGAP17Q68EM7 881 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TRNP1Q6NT89 227 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PAQR9Q6ZVX9 377 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 FUKQ8N0W3 1084 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 B3GALNT2Q8NCR0 500 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 C3orf20Q8ND61 904 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 SPATA4Q8NEY3 305 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 C18orf8Q96DM3 657 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 HINFPQ9BQA5 517 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RTP3Q9BQQ7 232 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 RHOXF2Q9BQY4 288 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 AP1M1Q9BXS5 423 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 FTHL17Q9BXU8 183 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 B3GNT5Q9BYG0 378 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TANC1Q9C0D5 1861 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 FAM124BQ9H5Z6 455 aaPredicted RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 SYNCQ9H7C4 482 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 ANKZF1Q9H8Y5 726 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 MRPL47Q9HD33 250 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 CRTAC1Q9NQ79 661 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 METTL5Q9NRN9 209 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 RBM12Q9NTZ6 932 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 PARVAQ9NVD7 372 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 TMEM161AQ9NX61 479 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 DDX43Q9NXZ2 648 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 TBX21Q9UL17 535 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 KIAA1257Q9ULG3 409 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 USTQ9Y2C2 406 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PRG3Q9Y2Y8 225 aaPredicted RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 NR2E1Q9Y466 385 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 SCINQ9Y6U3 715 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 MYBPHLA2RUH7 354 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 F8VP50 259 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 GRAP2O75791 330 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 BEST1O76090 585 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PYGMP11217 842 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 CTNNA1P35221 906 aaKnown RBP4.37□□□□□ -1.71
MCF2-201ENST00000338585 GJC1P36383 396 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PBX3P40426 434 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 PAFAH1B1P43034 410 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 OR1G1P47890 313 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 CACNA2D1P54289 1103 aa4.37□□□□□ -1.71
MCF2-201ENST00000338585 BCAR1P56945 870 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms