RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DHX32Q7L7V1 743 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 PRUNE1Q86TP1 453 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TMIEQ8NEW7 156 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 C1QTNF1Q9BXJ1 281 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 SLITRK2Q9H156 845 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 HSPBP1Q9NZL4 362 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 SRRM3A6NNA2 597 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 INPP4BO15327 924 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM20BO75063 409 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MAP3K6O95382 1288 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 DBIP07108 87 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 GSSP48637 474 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ARL4DP49703 201 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FANCCQ00597 558 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ACAP1Q15027 740 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 OASLQ15646 514 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 KCNA10Q16322 511 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FUT11Q495W5 492 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CXXC5Q7LFL8 322 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FCHSD1Q86WN1 690 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 GPBP1Q86WP2 473 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 NAT14Q8WUY8 206 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MAGOHBQ96A72 148 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 NEDD4LQ96PU5 975 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ACAT2Q9BWD1 397 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 OXCT2Q9BYC2 517 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CCDC8Q9H0W5 538 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MEAF6Q9HAF1 191 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF226Q9NYT6 803 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ADGRA3Q8IWK6 1321 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 WRBO00258 174 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SPTLC2O15270 562 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 AP2A1O95782 977 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MYL9P24844 172 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 AP2S1P53680 142 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 DDX39BQ13838 428 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FIGNL1Q6PIW4 674 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 COMMD1Q8N668 190 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 EMC1Q8N766 993 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 OR52K2Q8NGK3 314 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 OR5J2Q8NH18 312 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 PHF21BQ96EK2 531 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MMADHCQ9H3L0 296 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 NDFIP2Q9NV92 336 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC2A8Q9NY64 477 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MAD2L2Q9UI95 211 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 POLR1DQ9Y2S0 133 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 PTPN23Q9H3S7 1636 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CNOT3O75175 753 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 GCNT3O95395 438 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 HLA-DOAP06340 250 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 NOS2P35228 1153 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 RPL35P42766 123 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 DSTNP60981 165 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 VMACQ2NL98 169 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 C10orf76Q5T2E6 689 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ANKRD40Q6AI12 368 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CROCCP3Q8IVE0 287 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SRFBP1Q8NEF9 429 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 TRPV1Q8NER1 839 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CD300LFQ8TDQ1 290 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 KAT2BQ92831 832 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 TBCDQ9BTW9 1192 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 GPHNQ9NQX3 736 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 NAIPQ13075 1403 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 DENND4BO75064 1496 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MCIDASD6RGH6 385 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SRP72O76094 671 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ATP5BP06576 529 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 LYNP07948 512 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 GTF2IP78347 998 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 TBX2Q13207 712 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 IL18R1Q13478 541 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CCNG2Q16589 344 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CCDC137Q6PK04 289 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 GRAMD1CQ8IYS0 662 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FCGR1BQ92637 280 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FICDQ9BVA6 458 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ALG13Q9NP73 1137 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ABCB10Q9NRK6 738 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 RPS6KB2Q9UBS0 482 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 UBA2Q9UBT2 640 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FBXO40Q9UH90 709 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC12A6Q9UHW9 1150 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM172BPA6NC97 362 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SORBS3O60504 671 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SCO1O75880 301 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CD2P06729 351 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 PRKAR2BP31323 418 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 PSMC5P62195 406 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 GTF2H3Q13889 308 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF174Q15697 407 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 CARD16Q5EG05 197 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 MTFR2Q6P444 385 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 DTHD1Q6ZMT9 781 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 LRRC8DQ7L1W4 858 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 LPCAT2Q7L5N7 544 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 HASPINQ8TF76 798 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 SAT2Q96F10 170 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 RPRD1AQ96P16 312 aaPredicted RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms