RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 KCNMA1Q12791 1236 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 NCAPHQ15003 741 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 EFHC1Q5JVL4 640 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 RABGAP1LQ5R372 815 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 FAM91A1Q658Y4 838 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 CHSY1Q86X52 802 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 HM13Q8TCT9 377 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 MGARPQ8TDB4 240 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SCFD2Q8WU76 684 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 FOPNLQ96NB1 174 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SAMSN1Q9NSI8 373 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 ERAP1Q9NZ08 941 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PPARGC1AQ9UBK2 798 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PREX1Q8TCU6 1659 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 FAM208AQ9UK61 1670 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 GRIN2DO15399 1336 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TAF4O00268 1085 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 ANP32DO95626 131 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PLA2G4BP0C869 781 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 MAPK9P45984 424 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 RTP1P59025 263 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 BMT2Q1RMZ1 405 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 LRRC36Q1X8D7 754 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 KIF19Q2TAC6 998 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TLK2Q86UE8 772 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 MICALL2Q8IY33 904 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 KRT78Q8N1N4 520 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SHCBP1Q8NEM2 672 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SLC7A3Q8WY07 619 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 CCDC90BQ9GZT6 254 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 KRCC1Q9NPI7 259 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 DNAAF2Q9NVR5 837 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PRPSAP2O60256 369 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 IL18RAPO95256 599 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 KRT1P04264 644 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PTX3P26022 381 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 AIF1P55008 147 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 C6orf10Q5SRN2 563 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TMC3Q7Z5M5 1100 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 DEPTORQ8TB45 409 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF564Q8TBZ8 553 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 RDH12Q96NR8 316 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 BTBD10Q9BSF8 475 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 USE1Q9NZ43 259 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 HDAC6Q9UBN7 1215 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 WARS2Q9UGM6 360 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 ZBTB5O15062 677 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PRPF4O43172 522 aaKnown RBP eCLIP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TRPA1O75762 1119 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 GRK3P35626 688 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 RFC5P40937 340 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 NR2C2P49116 596 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 HARS2P49590 506 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PSMC1P62191 440 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TMED2Q15363 201 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SHROOM1Q2M3G4 852 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 KCTD16Q68DU8 428 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SCARA3Q6AZY7 606 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 C12orf56Q8IXR9 622 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SNX31Q8N9S9 440 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 C17orf50Q8WW18 174 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 MTERF3Q96E29 417 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 ANKRD36BP1Q96IX9 119 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 FRMD6Q96NE9 622 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 ING3Q9NXR8 418 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 AK5Q9Y6K8 562 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 EIF4E1BA6NMX2 242 aaKnown RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 JAK1P23458 1154 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 CYP2C18P33260 490 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 ARL3P36405 182 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 PTK6Q13882 451 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SHC4Q6S5L8 630 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SLC26A11Q86WA9 606 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 STX12Q86Y82 276 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 KBTBD8Q8NFY9 601 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 MOSPD2Q8NHP6 518 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TTC8Q8TAM2 541 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 FNIP1Q8TF40 1166 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 C15orf40Q8WUR7 153 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 RMND5BQ96G75 393 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-201ENST00000303395 SENP7Q9BQF6 1050 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TRPC4Q9UBN4 977 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 GGA1Q9UJY5 639 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 L3MBTL1Q9Y468 752 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 GJA3Q9Y6H8 435 aa5.45□□□□□ -1.54
SCN1A-201ENST00000303395 TMEM120BA0PK00 339 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 MTA2O94776 668 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 IFNB1P01574 187 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 CYP19A1P11511 503 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 GRIK1P39086 918 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 TXKP42681 527 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 KPNA1P52294 538 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 KCNH2Q12809 1159 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 PRKAA1Q13131 559 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 EPHA7Q15375 998 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 SLC13A5Q86YT5 568 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ALLCQ8N6M5 410 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 VMP1Q96GC9 406 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 ZIM3Q96PE6 472 aa5.44□□□□□ -1.54
SCN1A-201ENST00000303395 QKIQ96PU8 341 aaKnown RBP eCLIP5.44□□□□□ -1.541e-6■■■■□ 23.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms