RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 UTP6Q9NYH9 597 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 PVALEFA0A1B0GWK0 134 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 GJB6O95452 261 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 RALBP11234 206 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 COL9A2Q14055 689 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CYP4X1Q8N118 509 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 LPCAT1Q8NF37 534 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 DTX3LQ8TDB6 740 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 PRMT7Q9NVM4 692 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 STX7O15400 261 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 SUPT20HL2P0C7V6 817 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 BDNFP23560 247 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 GRIN3AQ8TCU5 1115 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 SERPINI1Q99574 410 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 ADNPQ9H2P0 1102 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 NPHS2Q9NP85 383 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 NDRG2Q9UN36 371 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 SYNGAP1Q96PV0 1343 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 A0A087WUV0 522 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 PODXLO00592 558 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 POLBP06746 335 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 SGCGQ13326 291 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CEP68Q76N32 757 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 NLGN2Q8NFZ4 835 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 TGS1Q96RS0 853 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 ACRP10323 421 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CDC25BP30305 580 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 GPC1P35052 558 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ANGPT1Q15389 498 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 PHKG1Q16816 387 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 OTOAQ7RTW8 1153 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 C2orf73Q8N5S3 287 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 FAM162AQ96A26 154 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 EMILIN2Q9BXX0 1053 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 STN1Q9H668 368 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.12□□□□□ -1.115e-7■□□□□ 8.7
SCN9A-201ENST00000303354 STAU1O95793 577 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ALOX15P16050 662 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 RFC5P40937 340 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 LAMTOR4Q0VGL1 99 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 PPP1R2P3Q6NXS1 205 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 DDX42Q86XP3 938 aaKnown RBP eCLIP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ABCG8Q9H221 673 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 DCTN3O75935 186 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 EIF2S1P05198 315 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 FDX1P10109 184 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ZFXP17010 805 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 FSCN1Q16658 493 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ATG4AQ8WYN0 398 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ASPSCR1Q9BZE9 553 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ZDHHC6Q9H6R6 413 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 GPSM3Q9Y4H4 160 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 PLEKHG2Q9H7P9 1386 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 HEATR9A2RTY3 570 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CYTH3O43739 400 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 SEC13P55735 322 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CES3Q6UWW8 571 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 LENG1Q96BZ8 264 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 WNT8AQ9H1J5 351 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 MROH8Q9H579 483 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 COPS7BQ9H9Q2 264 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 STX18Q9P2W9 335 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ALKQ9UM73 1620 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 BUD23O43709 281 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 NUDT14O95848 222 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ARFIP2P53365 341 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 OXCT1P55809 520 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 TRIM32Q13049 653 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 RNPC3Q96LT9 517 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 PANX2Q96RD6 677 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CCDC3Q9BQI4 270 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 FICDQ9BVA6 458 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 MID2Q9UJV3 735 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 KIF1BO60333 1816 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 TCEA1P23193 301 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CHI3L1P36222 383 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 MLH1P40692 756 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CPA2P48052 419 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 TKTL1P51854 596 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 EIF3BP55884 814 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 SP3Q02447 781 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CYTH1Q15438 398 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 KYAT1Q16773 422 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 KLHL38Q2WGJ6 581 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CBWD1Q9BRT8 395 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 FAM167BQ9BTA0 163 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 IPPQ9Y573 584 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 KPNA3O00505 521 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 CTSEP14091 401 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 COMTP21964 271 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 GARTP22102 1010 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 MYL6P60660 151 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ADCY2Q08462 1091 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 C16orf46Q6P387 395 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 METTL16Q86W50 562 aaKnown RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 ZNF669Q96BR6 464 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 LRRC1Q9BTT6 524 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 NFKBIL1Q9UBC1 381 aaPredicted RBP8.12□□□□□ -1.11
SCN9A-201ENST00000303354 SNCAIPQ9Y6H5 919 aa8.12□□□□□ -1.11
SCN9A-201ENST00000303354 MANSC4A6NHS7 340 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms