RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PURBQ96QR8 312 aaKnown RBP16.05■□□□□ 0.16
SHH-201ENST00000297261 TIPINQ9BVW5 301 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 CCDC68Q9H2F9 335 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 CAAP1Q9H8G2 361 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 AGPAT3Q9NRZ7 376 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 A0A0A6YYK5 440 aaPredicted RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 DGKIO75912 1065 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 TXNP10599 105 aaKnown RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 JAG1P78504 1218 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 SNRNP35Q16560 246 aaKnown RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 ACBD5Q5T8D3 534 aaPredicted RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 MROH9Q5TGP6 573 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 ERO1BQ86YB8 467 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 KRT35Q92764 455 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 CNBD2Q96M20 576 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 ANKRD27Q96NW4 1050 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 SENP7Q9BQF6 1050 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 CYP26B1Q9NR63 512 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 RARAP10276 462 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 SLC34A1Q06495 639 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 RASA2Q15283 850 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 FAM47CQ5HY64 1035 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 ZNF667Q5HYK9 610 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 MFN1Q8IWA4 741 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 MCEEQ96PE7 176 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 MED10Q9BTT4 135 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 ARMCX1Q9P291 453 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 NOD1Q9Y239 953 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 ATRNL1Q5VV63 1379 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 EPHX2P34913 555 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 SNAPC2Q13487 334 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 AUHQ13825 339 aaKnown RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 MAPK6Q16659 721 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 CCDC92Q53HC0 331 aaPredicted RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 WASHC2DQ5SRD0 308 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 TRIM72Q6ZMU5 477 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 DNAJC19Q96DA6 116 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 ANKEF1Q9NU02 776 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 AURKCQ9UQB9 309 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 LRP5O75197 1615 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 TMEM150BA6NC51 233 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 SNRPAP09012 282 aaKnown RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 TMED10P49755 219 aaKnown RBP16.04■□□□□ 0.16
SHH-201ENST00000297261 KCNV1Q6PIU1 500 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 LRRC74BQ6ZQY2 392 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 ZNF662Q6ZS27 426 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 IL31RAQ8NI17 732 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 BAP1Q92560 729 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 TBC1D10AQ9BXI6 508 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 DTNAQ9Y4J8 743 aa16.04■□□□□ 0.16
SHH-201ENST00000297261 NHSQ6T4R5 1651 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 ZNF541Q9H0D2 1346 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 UNC5CO95185 931 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 PTDSS1P48651 473 aaKnown RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 EIF1ADQ8N9N8 165 aaKnown RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 CENPTQ96BT3 561 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 DDX18Q9NVP1 670 aaKnown RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 ASNSD1Q9NWL6 643 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 DDX56Q9NY93 547 aaKnown RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 KCNN4O15554 427 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 PSMD10O75832 226 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 MUTP22033 750 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 ACOT2P49753 483 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 CLK2P49760 499 aaKnown RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 POU5F1BQ06416 359 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 MYLK4Q86YV6 388 aaPredicted RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 SEPT1Q8WYJ6 367 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 ARHGEF26Q96DR7 871 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 MED15Q96RN5 788 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 STRIP2Q9ULQ0 834 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 ARHGAP26Q9UNA1 814 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 PDE5AO76074 875 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 EGFRP00533 1210 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 PEX5P50542 639 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 CENPCQ03188 943 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 NFX1Q12986 1120 aaKnown RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 FAM102AQ5T9C2 384 aaPredicted RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 LRRC8EQ6NSJ5 796 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 IRGCQ6NXR0 463 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 MTMR14Q8NCE2 650 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 DDX50Q9BQ39 737 aaKnown RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 TMEM120AQ9BXJ8 343 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 ASCC2Q9H1I8 757 aaPredicted RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 KLHL8Q9P2G9 620 aaPredicted RBP16.03■□□□□ 0.16
SHH-201ENST00000297261 PCDHB2Q9Y5E7 798 aa16.03■□□□□ 0.16
SHH-201ENST00000297261 A8MUI8 341 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 LGR5O75473 907 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 EMC2Q15006 297 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 HABP4Q5JVS0 413 aaKnown RBP16.02■□□□□ 0.16
SHH-201ENST00000297261 ZNF720Q7Z2F6 126 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 SAMD3Q8N6K7 520 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 A1CFQ9NQ94 594 aaKnown RBP16.02■□□□□ 0.16
SHH-201ENST00000297261 TBC1D23Q9NUY8 699 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 CYP39A1Q9NYL5 469 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 FANCGO15287 622 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 KLHL2O95198 593 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 LDHAP00338 332 aaKnown RBP16.02■□□□□ 0.16
SHH-201ENST00000297261 PGK2P07205 417 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 NCALDP61601 193 aa16.02■□□□□ 0.16
SHH-201ENST00000297261 VGLL4Q14135 290 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms