RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 C16orf96A6NNT2 1141 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 ZNF263O14978 683 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 PYGLP06737 847 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 ACADSP16219 412 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 TCF7P36402 384 aaPredicted RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 NLRP11P59045 1033 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 OVGP1Q12889 678 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 MEA1Q16626 185 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 FBXO36Q8NEA4 188 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 TFB1MQ8WVM0 346 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 GPBP1L1Q9HC44 474 aaPredicted RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 SLC24A2Q9UI40 661 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 SLC39A10Q9ULF5 831 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 SHPRHQ149N8 1683 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 FAM237AA0A1B0GTK4 181 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 CES2O00748 559 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 TNPO2O14787 897 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 GLRA3O75311 464 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 VDRP11473 427 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 RPS12P25398 132 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 OTUD4Q01804 1114 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 PDK2Q15119 407 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 FAXCQ5TGI0 409 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 CDR2LQ86X02 465 aaPredicted RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 GMCL1P1Q8NEA9 526 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 IPMKQ8NFU5 416 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 ZNF507Q8TCN5 953 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 ZBED2Q9BTP6 218 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 RPS6KL1Q9Y6S9 549 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 RRN3P2A6NIE6 340 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 SRP72O76094 671 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 SEC24DO94855 1032 aaPredicted RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 MYCP01106 439 aaPredicted RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 EPHB2P29323 1055 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 KCNMA1Q12791 1236 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 LAMC2Q13753 1193 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 PTK6Q13882 451 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 NOTUMQ6P988 496 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 LINC00523Q86TU6 105 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 SLC20A1Q8WUM9 679 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 PRMT6Q96LA8 375 aaPredicted RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 PNMA5Q96PV4 448 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 CGRRF1Q99675 332 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 ILKAPQ9H0C8 392 aaPredicted RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 SEMA4AQ9H3S1 761 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.19□□□□□ -0.62
CD44-201ENST00000263398 GGA3Q9NZ52 723 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 TSR3Q9UJK0 312 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 BLOC1S6Q9UL45 172 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 UBQLN1Q9UMX0 589 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 HIST1H2AGP0C0S8 130 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 FAM200BP0CF97 657 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 CDH2P19022 906 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 HIST1H2ADP20671 130 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 TAF6P49848 677 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 SH3RF1Q7Z6J0 888 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 NUP93Q8N1F7 819 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 GTF3C2Q8WUA4 911 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 HIST1H2AHQ96KK5 128 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 HIST1H2AJQ99878 128 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 H2AFJQ9BTM1 129 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 MTMR12Q9C0I1 747 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 IL17RBQ9NRM6 502 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 KCND1Q9NSA2 647 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 A0A087X0B3 334 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 IQCA1LA6NCM1 817 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 H0Y626 953 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 PJA2O43164 708 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 TRIM16O95361 564 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 LSM8O95777 96 aaKnown RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 MST1RQ04912 1400 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 CYP24A1Q07973 514 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 DCAF4L1Q3SXM0 396 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 SLC35C1Q96A29 364 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 GID8Q9NWU2 228 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 DLGAP2Q9P1A6 1054 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 MAN1A2O60476 641 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 SUPT3HO75486 399 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 ANXA9O76027 345 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 HSPA1AP0DMV8 641 aaKnown RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 HSPA1BP0DMV9 641 aaKnown RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 ITGA4P13612 1032 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 PSMC6P62333 389 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 IRX1P78414 480 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 TMEM62Q0P6H9 643 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 STX5Q13190 355 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 SEZ6Q53EL9 994 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 KCNT1Q5JUK3 1230 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 SLC47A2Q86VL8 602 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 CD302Q8IX05 232 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 EFHBQ8N7U6 833 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 ENO4A6NNW6 628 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 C6orf222P0C671 652 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 SUPT20HL2P0C7V6 817 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 MAPTP10636 758 aaKnown RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 NCAM1P13591 858 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 MAP3K10Q02779 954 aa11.18□□□□□ -0.62
CD44-201ENST00000263398 EN1Q05925 392 aaPredicted RBP11.18□□□□□ -0.62
CD44-201ENST00000263398 SNAPC2Q13487 334 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms