RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 F11P03951 625 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 RETP07949 1114 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 PDGFRBP09619 1106 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 PDE6CP51160 858 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 TNNC1P63316 161 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 TRIM68Q6AZZ1 485 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 HS2ST1Q7LGA3 356 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 MON1AQ86VX9 555 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 HSCBQ8IWL3 235 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 ZSWIM2Q8NEG5 633 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 SPATA18Q8TC71 538 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 LEO1Q8WVC0 666 aaPredicted RBP13.12□□□□□ -0.31
TRAF4-202ENST00000262396 LRRC3BQ96PB8 259 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 SYT15Q9BQS2 421 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 IL21Q9HBE4 155 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 INTS13Q9NVM9 706 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 DUS2Q9NX74 493 aaKnown RBP13.12□□□□□ -0.31
TRAF4-202ENST00000262396 GDAP2Q9NXN4 497 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 HSPBP1Q9NZL4 362 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 CDH9Q9ULB4 789 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 VPS13AQ96RL7 3174 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 GVINP1Q7Z2Y8 2422 aa13.12□□□□□ -0.31
TRAF4-202ENST00000262396 SPTBN4Q9H254 2564 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 SOBPA7XYQ1 873 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 CYP2J2P51589 502 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 PSMC1P62191 440 aaKnown RBP13.11□□□□□ -0.31
TRAF4-202ENST00000262396 DPH6Q7L8W6 267 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 NELFCDQ8IXH7 590 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 ZNF687Q8N1G0 1237 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 C12orf50Q8NA57 414 aaPredicted RBP13.11□□□□□ -0.31
TRAF4-202ENST00000262396 OR6B3Q8NGW1 331 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 NELL1Q92832 810 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 USP13Q92995 863 aaPredicted RBP13.11□□□□□ -0.31
TRAF4-202ENST00000262396 CCDC127Q96BQ5 260 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 FUBP3Q96I24 572 aaKnown RBP eCLIP13.11□□□□□ -0.31
TRAF4-202ENST00000262396 STRA6Q9BX79 667 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 TRPM5Q9NZQ8 1165 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 CCL26Q9Y258 94 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 TICRRQ7Z2Z1 1910 aa13.11□□□□□ -0.31
TRAF4-202ENST00000262396 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 EIF3DO15371 548 aaKnown RBP eCLIP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 FOXD2O60548 495 aaPredicted RBP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 CUTAO60888 179 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 PPP6R2O75170 966 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 HMGA1P17096 107 aaKnown RBP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 HDCP19113 662 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 DRD1P21728 446 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 ME1P48163 572 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 NASPP49321 788 aaPredicted RBP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 WNT7BP56706 349 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 FAM160A1Q05DH4 1040 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 IFRD2Q12894 506 aaPredicted RBP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 SRSF5Q13243 272 aaKnown RBP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 GAS6Q14393 721 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 MTF1Q14872 753 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 AASDHQ4L235 1098 aaPredicted RBP13.1□□□□□ -0.31
TRAF4-202ENST00000262396 FAM26FQ5R3K3 315 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 OSTM1Q86WC4 334 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 CBWD2Q8IUF1 395 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 WDR49Q8IV35 697 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 CEP57L1Q8IYX8 460 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 LINC00301Q8NCQ3 95 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 CCDC26Q8TAB7 109 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 ATP2A3Q93084 1043 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 HPS3Q969F9 1004 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 FAM84AQ96KN4 292 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 P2RY13Q9BPV8 354 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 RTKNQ9BST9 563 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 FGFBP2Q9BYJ0 223 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 TRIM9Q9C026 710 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 DLL3Q9NYJ7 618 aa13.1□□□□□ -0.31
TRAF4-202ENST00000262396 F5P12259 2224 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 PATJQ8NI35 1801 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 A0A087X0B3 334 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 MED19A0JLT2 244 aaPredicted RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 FRMD3A2A2Y4 597 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 TRIM66O15016 1216 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 AXIN1O15169 862 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 CLIC2O15247 247 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 HRO43593 1189 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 LRP3O75074 770 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 RNF40O75150 1001 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 RPP40O75818 363 aaKnown RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 NOL4O94818 638 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 PDIA4P13667 645 aaKnown RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 ARSAP15289 507 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 TRIM21P19474 475 aaKnown RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 BDNFP23560 247 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 GNL1P36915 607 aaPredicted RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 PXNP49023 591 aaPredicted RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 ATXN1P54253 815 aaKnown RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 DMWDQ09019 674 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 BIRC3Q13489 604 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 CCINQ13939 588 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 ZNF268Q14587 947 aaPredicted RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 SNRNP35Q16560 246 aaKnown RBP13.09□□□□□ -0.31
TRAF4-202ENST00000262396 SOWAHAQ2M3V2 549 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 CFAP221Q4G0U5 840 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 FBXO43Q4G163 708 aa13.09□□□□□ -0.31
TRAF4-202ENST00000262396 IL31Q6EBC2 164 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms