RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SLC10A3P09131 477 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 GSTA2P09210 222 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 DARSP14868 501 aaKnown RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 STX1BP61266 288 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 TRADDQ15628 312 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 CXorf38Q8TB03 319 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 ACTRT1Q8TDG2 376 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 VCXQ9H320 206 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 AGPAT5Q9NUQ2 364 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 BTBD7Q9P203 1132 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 TPX2Q9ULW0 747 aaKnown RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 CTIFO43310 598 aaKnown RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 PPP2R5DQ14738 602 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 PTPROQ16827 1216 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 NOMO2Q5JPE7 1267 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 CPB2Q96IY4 423 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 TRIM54Q9BYV2 358 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 INTS9Q9NV88 658 aaKnown RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 PMS2P54278 862 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 ATP11AP98196 1134 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 FAM187BQ17R55 369 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 TTC23LQ6PF05 361 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 GPIHBP1Q8IV16 184 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 PPFIBP2Q8ND30 876 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 STMN2Q93045 179 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 EMID1Q96A84 441 aaPredicted RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 MYH7P12883 1935 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 TBKBP1A7MCY6 615 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 BRD2P25440 801 aaKnown RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 CNGA2Q16280 664 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 LDLRAD1Q5T700 205 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 CPA5Q8WXQ8 436 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 SAYSD1Q9NPB0 183 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 METTL5Q9NRN9 209 aaKnown RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 NFU1Q9UMS0 254 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 ASTN1O14525 1302 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 SH3BP5O60239 455 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 SEPT6Q14141 434 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 TMED2Q15363 201 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 RNF25Q96BH1 459 aaPredicted RBP14.28□□□□□ -0.12
LDLR-201ENST00000252444 VAT1Q99536 393 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 VCX3BQ9H321 246 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 ARHGAP28Q9P2N2 729 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 DNPEPQ9ULA0 475 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 USH1CQ9Y6N9 552 aa14.28□□□□□ -0.12
LDLR-201ENST00000252444 FRMD3A2A2Y4 597 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 AP1B1Q10567 949 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 TBX2Q13207 712 aaPredicted RBP14.27□□□□□ -0.12
LDLR-201ENST00000252444 BTG3Q14201 252 aaPredicted RBP14.27□□□□□ -0.12
LDLR-201ENST00000252444 RPS6KA2Q15349 733 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 AARS2Q5JTZ9 985 aaKnown RBP14.27□□□□□ -0.12
LDLR-201ENST00000252444 JADE1Q6IE81 842 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 TAS1R2Q8TE23 839 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 PARD6BQ9BYG5 372 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 RAD18Q9NS91 495 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 RSPH14Q9UHP6 348 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 ATP8A1Q9Y2Q0 1164 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 PPP3CCP48454 512 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 MNAT1P51948 309 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 PLCD3Q8N3E9 789 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 KRT82Q9NSB4 513 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 DDX43Q9NXZ2 648 aaKnown RBP14.27□□□□□ -0.12
LDLR-201ENST00000252444 ZNF212Q9UDV6 495 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 FAM50BQ9Y247 325 aa14.27□□□□□ -0.12
LDLR-201ENST00000252444 MAP3K7O43318 606 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 IZUMO3Q5VZ72 239 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 ADAT2Q7Z6V5 191 aaKnown RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 TBC1D19Q8N5T2 526 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 EIF1ADQ8N9N8 165 aaKnown RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 ZNF668Q96K58 619 aaPredicted RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 NTPCRQ9BSD7 190 aaKnown RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 RBPJLQ9UBG7 517 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 PCSK1NQ9UHG2 260 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 FOXN3O00409 490 aaPredicted RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 FGF10O15520 208 aaPredicted RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 PDGFRBP09619 1106 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 WEE2P0C1S8 567 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 GHRHRQ02643 423 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 ZNF177Q13360 481 aaPredicted RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 ITGA7Q13683 1181 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 BYSLQ13895 437 aaKnown RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 SH2D4BQ5SQS7 431 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 C10orf120Q5SQS8 335 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 VSIG1Q86XK7 387 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 SPATA4Q8NEY3 305 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 CDT1Q9H211 546 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 WDCPQ9H6R7 721 aa14.27□□□□□ -0.13
LDLR-201ENST00000252444 MRPL40Q9NQ50 206 aaKnown RBP14.27□□□□□ -0.13
LDLR-201ENST00000252444 GTF2H3Q13889 308 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 PPP1R15BQ5SWA1 713 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 UBXN6Q9BZV1 441 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 KCTD10Q9H3F6 313 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 CREBZFQ9NS37 354 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 ALG6Q9Y672 507 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 ERICH4A6NGS2 130 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SPDYCQ5MJ68 293 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 LRRC55Q6ZSA7 311 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 SLFN11Q7Z7L1 901 aa14.26□□□□□ -0.13
LDLR-201ENST00000252444 BRI3BPQ8WY22 251 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms